PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000227G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 909aa    MW: 100719 Da    PI: 6.2367
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000227G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17119239199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE.....................EEETTE...EEE-TTH CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy...................rkksgr...yvltkGW 65 
                      f+k+lt sd++++g +++ ++ ae+        ++++++  +l+ +d++g++W++++i+                   +   ++   ++lt+GW
  PH01000227G0020 119 FCKTLTASDTSTHGGFSVRRRAAEKVfppldftQQPPAQ--ELIAKDLHGNEWKFRHIFrvhkasyhsivscslvsynS---CQpkrHLLTTGW 207
                      99*****************************86555544..8***************9999999999999999995433...334559999*** PP

                      HHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  66 keFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + Fv+a++L +gD+v+F   ++++ +l+++++r+
  PH01000227G0020 208 SVFVSAKRLVAGDSVLFI--WNDNNQLLLGIRRA 239
                      ******************..7777778***9997 PP
2Auxin_resp118.93.9e-39264347183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrW nS+Wrs+k
  PH01000227G0020 264 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWLNSHWRSVK 347
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-41104267IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-38110253IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-16118238No hitNo description
SMARTSM010192.7E-13119240IPR003340B3 DNA binding domain
PfamPF023629.4E-16119239IPR003340B3 DNA binding domain
PROSITE profilePS5086310.926119240IPR003340B3 DNA binding domain
PfamPF065076.6E-34264347IPR010525Auxin response factor
SuperFamilySSF542775.43E-7770852No hitNo description
PfamPF023091.6E-6773862IPR033389AUX/IAA domain
PROSITE profilePS5174523.327776860IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MKLSPWTGGG LPDQPASPEV AEEQKCLNSE LWHACAGPLV SLPEVAASTN KEMESQIPNY  60
PNLPPQLICQ LHNVTMHADA ETDEVYAQMT LQPLSPQELK DPFLPAELGA ASKQPTNYFC  120
KTLTASDTST HGGFSVRRRA AEKVFPPLDF TQQPPAQELI AKDLHGNEWK FRHIFRVHKA  180
SYHSIVSCSL VSYNSCQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNDNN QLLLGIRRAN  240
RPQTVMPSSV LSSDSMHIGL LAAAAHAAST NSRFTIFYNP RASPSEFVIP LAKYVKAVYH  300
TRISVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWLN SHWRSVKVGW DESTAGERQP  360
RVSLWEIEPL TTFPMYPSPF PLRLKRPWPT GLPSLYGGKD DDLTSSLMWL RDGASPGFQS  420
LNFGGLGISP WMQPRLDSSL LGLQPDMYRT IAAAALQNTT KQVPPAVLQF QQPQNIVSRS  480
ALLSSQILQQ VQPQFQQMYH QNINENTIQG HTQAEYLQQQ LQRCQSFNEQ KPQQQQQSQC  540
VQTPQHQQMQ QQKHLLNYQS VPNALLAFSQ LSSATESLPS TLQTVSAFSQ QQNFTDTNTS  600
SLSPSNVSSM HNTLRPFRSE AASNLPGVPR TTPESVSDPW SSKRVAVESV IPSRPHVISS  660
QIEQLDLTPS NIPQSSALAP LPGRECLVDQ DGSSDPQNHL LFGANIDSQS LLMQGGIPSL  720
QNDNGSSTIP FSTSNFLSPC QNDFPLNQAL TSSGCLDESE YVPCSENSDQ VNRPPPTFVN  780
VYKSGTVGRL LDITRFSSYH ELRSEVGRLF GLEGQLEDPL RSGWQLVFVD REDDVLLVGD  840
DPWQEFVSSV SCIKILSPQE VQQMGKQGIE LFSSAPARML GNSCDNYVSR QESRSLSTGI  900
ASMGSVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1412736851388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000227G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705690.0AK070569.1 Oryza sativa Japonica Group cDNA clone:J023056C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199461.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A3B6QC060.0A0A3B6QC06_WHEAT; Auxin response factor
TrEMBLA0A453NFY90.0A0A453NFY9_AEGTS; Auxin response factor
STRINGTraes_6DS_F95C12EBB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]