PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000223G0520
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 199aa    MW: 21325 Da    PI: 6.0354
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000223G0520genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like932.5e-2995148155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++WtpeLH+rFveav++L G + A+Pk+i++lm+vkgLt+e+v+SHLQkYRl
  PH01000223G0520  95 KARMVWTPELHHRFVEAVAHL-GDKGAVPKAIVRLMNVKGLTRENVASHLQKYRL 148
                      68*******************.999*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.90392151IPR017930Myb domain
SuperFamilySSF466892.15E-1994152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2994152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-2495148IPR006447Myb domain, plants
PfamPF002495.2E-1097147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVDAEACGRV LEWEVGLPAA GELTPVSNHL IPPALAAAFR IDLAGILPSS VDARLAYDSP  60
TSRFDEDDEE EEGEGETEDA ASGAEGERGV RGGKKARMVW TPELHHRFVE AVAHLGDKGA  120
VPKAIVRLMN VKGLTRENVA SHLQKYRLYL KRARTAAAAA TPPAPPPYFS RFSAQSRPDT  180
ANRSGCCAFV SCEKIGRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-2795151157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000223G0520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0666594e-75AK066659.1 Oryza sativa Japonica Group cDNA clone:J013068K17, full insert sequence.
GenBankAP0032514e-75AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05.
GenBankAP0149574e-75AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126094e-75CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567265.21e-66transcription factor PCL1
SwissprotQ9LTH42e-37PCLL_ARATH; Transcription factor BOA
TrEMBLA0A0Q3GJF83e-65A0A0Q3GJF8_BRADI; Uncharacterized protein
STRINGBRADI2G54787.14e-64(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.15e-33G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]