PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000222G1060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 160aa MW: 18035.8 Da PI: 11.1758 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.3 | 1.6e-26 | 108 | 157 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+nk+ rqvtfskRrng+lKKA+EL +LCdaeva+++fs+ g+++ +ss PH01000222G1060 108 RIDNKISRQVTFSKRRNGLLKKAYELAILCDAEVALVLFSHAGRVFQFSS 157 9***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05634 | 1.4E-10 | 47 | 113 | IPR023342 | APO domain |
SMART | SM00432 | 6.6E-27 | 52 | 158 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-24 | 101 | 121 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-23 | 105 | 158 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.59E-31 | 107 | 158 | No hit | No description |
PROSITE profile | PS50066 | 25.609 | 107 | 159 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-25 | 108 | 155 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-24 | 121 | 136 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-24 | 136 | 157 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MPPTGLLAWQ AISARADALG RSLRPPLGTA ARRLHSGGET GGEEFPYADI PRPRRKWERK 60 PYVTPMKVLI WRDKEERRAR RENPCRVLDH PPGNGLLTSH LAEFAHQRID NKISRQVTFS 120 KRRNGLLKKA YELAILCDAE VALVLFSHAG RVFQFSSSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 7e-16 | 108 | 158 | 9 | 59 | Myocyte-specific enhancer factor 2B |
1n6j_B | 7e-16 | 108 | 158 | 9 | 59 | Myocyte-specific enhancer factor 2B |
1tqe_P | 6e-16 | 108 | 158 | 10 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-16 | 108 | 158 | 10 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-16 | 108 | 158 | 10 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-16 | 108 | 158 | 10 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_A | 6e-16 | 108 | 158 | 10 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-16 | 108 | 158 | 10 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-16 | 108 | 158 | 10 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-16 | 108 | 158 | 10 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-16 | 108 | 158 | 10 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-16 | 108 | 158 | 10 | 60 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 55 | RPRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000222G1060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY188330 | 2e-64 | AY188330.1 Sorghum bicolor phytochelatin synthetase-like protein 1, phytochelatin synthetase-like protein 2, and cytochrome b5 (Cyb5) genes, complete cds; and MADS box protein AGLG1 (Aglg1) gene, partial cds. | |||
GenBank | EU964895 | 2e-64 | EU964895.1 Zea mays clone 282407 MADS-box transcription factor 34 mRNA, complete cds. | |||
GenBank | JN661606 | 2e-64 | JN661606.1 Chasmanthium latifolium panicle phytomer 2-like protein (PAP2) mRNA, partial cds. | |||
GenBank | KF469299 | 2e-64 | KF469299.1 Brachypodium distachyon MADS-box transcription factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575155.1 | 2e-36 | APO protein 3, mitochondrial | ||||
TrEMBL | I1IAK9 | 5e-35 | I1IAK9_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G45970.1 | 8e-36 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 5e-23 | MIKC_MADS family protein |