PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000220G0710
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family BBR-BPC
Protein Properties Length: 348aa    MW: 38137.4 Da    PI: 10.2228
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000220G0710genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind355.79.6e-10913341300
        GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..........rernlalsekkaavaerd........................m 58 
                      mdddgs + rn+g+ye     k nlglqlmss+a +rd+k+          + +      ++a+++++                         m
  PH01000220G0710   1 MDDDGSLSiRNWGFYETV---KGNLGLQLMSSVApDRDTKPllpngtflqhHGH------HNAPHHPQHhpqhlhgggggasggmpteppsvhM 85 
                      9**************988...************99******7776655442112......22222222255568899***************** PP

        GAGA_bind  59 aflqrdkalae...rnkalverdnkllalllvensla...........salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpie 138
                      +f+++d++++    ++++ ++r++k+l+ l+v  +             +++p+g++++++++ +++lq+     ++++  + ++ee    +p++
  PH01000220G0710  86 DFVRNDAWMHPsqhQHQHQHPREQKVLHSLPVGPTGHighpghgghavHHHPTGYGMMPDAHGAHTLQM-----MQPQELPPPKEE-RMPPPLV 173
                      *********986666788999*********9998877899999****99********************.....666666644444.5667777 PP

        GAGA_bind 139 eaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqS 232
                      e+++++++++ +kkrq++++pk++k kk+kk  ++++++ ++++  +r + +kk +++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqS
  PH01000220G0710 174 EEHSVVRNEPPMKKRQQGRQPKSPKPKKPKK-VAAPREDGAPNGPAPRGRGPKKPVGMVINGIDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQS 266
                      88888899999999*****************.67899999999988************************************************ PP

        GAGA_bind 233 aCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                      aCCtt+iS+yPLP+s+krrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvti
  PH01000220G0710 267 ACCTTSISTYPLPMSPKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTI 334
                      *******************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.8E-1841335IPR010409GAGA-binding transcriptional activator
PfamPF062171.0E-1201334IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDDDGSLSIR NWGFYETVKG NLGLQLMSSV APDRDTKPLL PNGTFLQHHG HHNAPHHPQH  60
HPQHLHGGGG GASGGMPTEP PSVHMDFVRN DAWMHPSQHQ HQHQHPREQK VLHSLPVGPT  120
GHIGHPGHGG HAVHHHPTGY GMMPDAHGAH TLQMMQPQEL PPPKEERMPP PLVEEHSVVR  180
NEPPMKKRQQ GRQPKSPKPK KPKKVAAPRE DGAPNGPAPR GRGPKKPVGM VINGIDLDLS  240
RIPTPVCSCT GAPQQCYRWG AGGWQSACCT TSISTYPLPM SPKRRGARIA GRKMSQGAFK  300
KVLEKLAGEG YNLNNPIDLK TFWAKHGTNK FVTISSWLYA EVFSIER*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204PKKPKKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000220G0710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0999330.0FP099933.1 Phyllostachys edulis cDNA clone: bphyem110m15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.11e-164protein Barley B recombinant
RefseqXP_021309578.11e-164protein Barley B recombinant
SwissprotQ8GUC31e-166BBR_HORVU; Protein Barley B recombinant
TrEMBLA0A3B6HR631e-166A0A3B6HR63_WHEAT; Uncharacterized protein
TrEMBLA0A446QQ331e-166A0A446QQ33_TRITD; Uncharacterized protein
STRINGTraes_4AS_48979CBE1.21e-167(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.38e-59basic pentacysteine 2