PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000220G0710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 348aa MW: 38137.4 Da PI: 10.2228 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 355.7 | 9.6e-109 | 1 | 334 | 1 | 300 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..........rernlalsekkaavaerd........................m 58 mdddgs + rn+g+ye k nlglqlmss+a +rd+k+ + + ++a+++++ m PH01000220G0710 1 MDDDGSLSiRNWGFYETV---KGNLGLQLMSSVApDRDTKPllpngtflqhHGH------HNAPHHPQHhpqhlhgggggasggmpteppsvhM 85 9**************988...************99******7776655442112......22222222255568899***************** PP GAGA_bind 59 aflqrdkalae...rnkalverdnkllalllvensla...........salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpie 138 +f+++d++++ ++++ ++r++k+l+ l+v + +++p+g++++++++ +++lq+ ++++ + ++ee +p++ PH01000220G0710 86 DFVRNDAWMHPsqhQHQHQHPREQKVLHSLPVGPTGHighpghgghavHHHPTGYGMMPDAHGAHTLQM-----MQPQELPPPKEE-RMPPPLV 173 *********986666788999*********9998877899999****99********************.....666666644444.5667777 PP GAGA_bind 139 eaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqS 232 e+++++++++ +kkrq++++pk++k kk+kk ++++++ ++++ +r + +kk +++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqS PH01000220G0710 174 EEHSVVRNEPPMKKRQQGRQPKSPKPKKPKK-VAAPREDGAPNGPAPRGRGPKKPVGMVINGIDLDLSRIPTPVCSCTGAPQQCYRWGAGGWQS 266 88888899999999*****************.67899999999988************************************************ PP GAGA_bind 233 aCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 aCCtt+iS+yPLP+s+krrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvti PH01000220G0710 267 ACCTTSISTYPLPMSPKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTI 334 *******************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.8E-184 | 1 | 335 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.0E-120 | 1 | 334 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MDDDGSLSIR NWGFYETVKG NLGLQLMSSV APDRDTKPLL PNGTFLQHHG HHNAPHHPQH 60 HPQHLHGGGG GASGGMPTEP PSVHMDFVRN DAWMHPSQHQ HQHQHPREQK VLHSLPVGPT 120 GHIGHPGHGG HAVHHHPTGY GMMPDAHGAH TLQMMQPQEL PPPKEERMPP PLVEEHSVVR 180 NEPPMKKRQQ GRQPKSPKPK KPKKVAAPRE DGAPNGPAPR GRGPKKPVGM VINGIDLDLS 240 RIPTPVCSCT GAPQQCYRWG AGGWQSACCT TSISTYPLPM SPKRRGARIA GRKMSQGAFK 300 KVLEKLAGEG YNLNNPIDLK TFWAKHGTNK FVTISSWLYA EVFSIER* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 198 | 204 | PKKPKKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00253 | DAP | Transfer from AT2G01930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000220G0710 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099933 | 0.0 | FP099933.1 Phyllostachys edulis cDNA clone: bphyem110m15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002461880.1 | 1e-164 | protein Barley B recombinant | ||||
Refseq | XP_021309578.1 | 1e-164 | protein Barley B recombinant | ||||
Swissprot | Q8GUC3 | 1e-166 | BBR_HORVU; Protein Barley B recombinant | ||||
TrEMBL | A0A3B6HR63 | 1e-166 | A0A3B6HR63_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QQ33 | 1e-166 | A0A446QQ33_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_48979CBE1.2 | 1e-167 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 8e-59 | basic pentacysteine 2 |