PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000219G0690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 281aa    MW: 30409.9 Da    PI: 6.7086
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000219G0690genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.52e-1762114456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++++  eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  PH01000219G0690  62 KRRLRVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 114
                      457889**********************************************9 PP

2HD-ZIP_I/II126.41.3e-4060151192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrl  eqv++LE++Fe  +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L +++++L++e+ 
  PH01000219G0690  60 EKKRRLRVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDSLVAHNNKLQAEIV 151
                      69**************************************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-1844116IPR009057Homeodomain-like
SuperFamilySSF466892.18E-1951118IPR009057Homeodomain-like
PROSITE profilePS5007116.60156116IPR001356Homeobox domain
SMARTSM003894.0E-1659120IPR001356Homeobox domain
PfamPF000467.0E-1561114IPR001356Homeobox domain
CDDcd000861.72E-1761117No hitNo description
PRINTSPR000311.2E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000311.2E-596112IPR000047Helix-turn-helix motif
PfamPF021831.0E-12116155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAPPPMLGGS KRPPPPMYTD GDDDASNHHH HELAGQAEHL QDGAASDDEE GSAAGCGGTE  60
KKRRLRVEQV RTLEKNFELG NKLEPERKLQ LARALGLQPR QVAIWFQNRR ARWKTKQLEK  120
DYDALRRQLD AARAENDSLV AHNNKLQAEI VALKGGGGRQ EAASELINLN VKETEASRSN  180
RSENSSEINL AVSRPAAVES PMNHPGAIPF YASVGRPGAG VDIHQLLHSH SSSPAVAPPP  240
KMELGSGIEA TATNFGSLLC GAVDEPPPFW PWADGHPHFH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000219G0690
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0950040.0FP095004.1 Phyllostachys edulis cDNA clone: bphylf056d17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001339824.11e-103homeobox-leucine zipper protein HOX23
SwissprotQ8S7W95e-95HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A1E5V6C71e-108A0A1E5V6C7_9POAL; Homeobox-leucine zipper protein HOX23
STRINGPavir.Ia02126.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-47HD-ZIP family protein