PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000219G0690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 281aa MW: 30409.9 Da PI: 6.7086 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.5 | 2e-17 | 62 | 114 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k PH01000219G0690 62 KRRLRVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWK 114 457889**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126.4 | 1.3e-40 | 60 | 151 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl eqv++LE++Fe +kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L +++++L++e+ PH01000219G0690 60 EKKRRLRVEQVRTLEKNFELGNKLEPERKLQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDSLVAHNNKLQAEIV 151 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 44 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.18E-19 | 51 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.601 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-16 | 59 | 120 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.0E-15 | 61 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.72E-17 | 61 | 117 | No hit | No description |
PRINTS | PR00031 | 1.2E-5 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-12 | 116 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MAPPPMLGGS KRPPPPMYTD GDDDASNHHH HELAGQAEHL QDGAASDDEE GSAAGCGGTE 60 KKRRLRVEQV RTLEKNFELG NKLEPERKLQ LARALGLQPR QVAIWFQNRR ARWKTKQLEK 120 DYDALRRQLD AARAENDSLV AHNNKLQAEI VALKGGGGRQ EAASELINLN VKETEASRSN 180 RSENSSEINL AVSRPAAVES PMNHPGAIPF YASVGRPGAG VDIHQLLHSH SSSPAVAPPP 240 KMELGSGIEA TATNFGSLLC GAVDEPPPFW PWADGHPHFH * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 108 | 116 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000219G0690 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095004 | 0.0 | FP095004.1 Phyllostachys edulis cDNA clone: bphylf056d17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001339824.1 | 1e-103 | homeobox-leucine zipper protein HOX23 | ||||
Swissprot | Q8S7W9 | 5e-95 | HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | A0A1E5V6C7 | 1e-108 | A0A1E5V6C7_9POAL; Homeobox-leucine zipper protein HOX23 | ||||
STRING | Pavir.Ia02126.1.p | 1e-108 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2289 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-47 | HD-ZIP family protein |