PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000210G1070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 370aa    MW: 40807.2 Da    PI: 4.4445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000210G1070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18117166255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++a +++++g
  PH01000210G1070 117 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSAEEAARAYDAEARRIRG 166
                      69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-31117175IPR001471AP2/ERF domain
CDDcd000187.45E-32117176No hitNo description
SuperFamilySSF541711.63E-21117174IPR016177DNA-binding domain
SMARTSM003807.8E-36117180IPR001471AP2/ERF domain
PROSITE profilePS5103223.881117174IPR001471AP2/ERF domain
PfamPF008472.3E-11118166IPR001471AP2/ERF domain
PRINTSPR003674.2E-11118129IPR001471AP2/ERF domain
PRINTSPR003674.2E-11140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MCGGAILEFK EPARSRRLAE GSLWPEKKKS RRGGGERRNP VVFVEEDDED FEACFEEFEG  60
DSGDSDLEFG EEEEDDVVEI KPPAVKRAFS RDGLSTMTTA GFDGPAARSA KRTRKNQYRG  120
IRQRPWGKWA AEIRDPRKGV RVWLGTFNSA EEAARAYDAE ARRIRGKKAK VNFPEAPTVA  180
QKRHAGPIAA KAPKSSVEQK PTVKPAVNNL ANTNAFIYPS ADFTSNKLFV QPDNMPFVPA  240
MNSAAPIDDP MNIYSDQGSN SFGCSDLSWE NDTKTPDITS IAPISTIPEG DESAFIKSDT  300
HNSLVPPVME NNTVDLTDGL TDLEPYMRFL LDGGAGESID SLLNLDGSQD VVSDMDLWSF  360
DDMPISSDFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19116174160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19117174563ATERF1
3gcc_A1e-19117174563ATERF1
5wx9_A2e-191161751373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000210G1070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1009820.0FP100982.1 Phyllostachys edulis cDNA clone: bphylf055p09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816350.10.0ethylene-responsive transcription factor 1
SwissprotQ6K7E60.0ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A3L6RNH80.0A0A3L6RNH8_PANMI; Ethylene-responsive transcription factor 1-like
STRINGPavir.Aa00281.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-34related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]