PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000210G0740
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 238aa    MW: 25376.1 Da    PI: 4.8642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000210G0740genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-161262155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr++k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g
  PH01000210G0740 12 KKYKGVRRRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAAFVCLRG 62
                     59*****998.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-251275No hitNo description
PfamPF008472.4E-91360IPR001471AP2/ERF domain
PROSITE profilePS5103222.0231373IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-181375IPR016177DNA-binding domain
SMARTSM003805.5E-291379IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-271375IPR001471AP2/ERF domain
PRINTSPR003679.0E-91425IPR001471AP2/ERF domain
PRINTSPR003679.0E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEGGSGGSRG SKKYKGVRRR KWGKWVSEIR LPNSRERIWL GSYDAPEKAA RAFDAAFVCL  60
RGRGAAGADL NFPDSPPPCS DMGRSSDPQE VQAAALSHAN RAPVTAQEAA AALMDVDSPA  120
TLSEEFVTHD MDAVFGSSEV VAPAVRADGS IDWRPVMAHP PPLFSPTGWC GNAYDFLQVP  180
PPPGDEDLED SSHGASASLW SFEPLTRETR TSDTKAARTC MEESSHGATT LDDATRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-13273372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11420KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000210G0740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042573e-82AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08.
GenBankAP0149583e-82AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794487.12e-97ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC29e-37ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2S3GTS84e-96A0A2S3GTS8_9POAL; Uncharacterized protein
STRINGPavir.J00593.1.p5e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.19e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]