PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000209G0490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 34250 Da PI: 8.0904 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 54 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ PH01000209G0490 54 RGHWRPAEDARLKELVAQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 99 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.4 | 3.4e-18 | 106 | 150 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ + PH01000209G0490 106 RRAFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 150 678*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.595 | 49 | 100 | IPR017930 | Myb domain |
SMART | SM00717 | 5.7E-14 | 53 | 102 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.62E-28 | 54 | 147 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-16 | 54 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 55 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.26E-13 | 57 | 98 | No hit | No description |
PROSITE profile | PS51294 | 27.733 | 101 | 155 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-16 | 105 | 153 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-15 | 106 | 150 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-21 | 108 | 154 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.77E-8 | 117 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051782 | Biological Process | negative regulation of cell division | ||||
GO:0071367 | Biological Process | cellular response to brassinosteroid stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MAHEMSGGFF GHPPPPAPFQ EQLVVEDEGY HGHVDEAEEG GHGGGGVQGK LCARGHWRPA 60 EDARLKELVA QYGPQNWNLI AEKLDGRSGK SCRLRWFNQL DPRINRRAFS EEEEERLLAA 120 HRAYGNKWAL IARLFPGRTD NAVKNHWHVL MARKQREQSG AFRRRKPSSS SSSPSSPVPP 180 PHLLPVVALH HHHHGSPLPL HQNQYSTAAA AHAQAQQYNA AAATRAYSGG ESDESASTCT 240 TDLSLSAGSA AVPCFYHQSY DMVPQATAPL AAFAPSARSA FSAPSSARVR REAAADQGSG 300 DKLTLPFFDF LGVGAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-33 | 54 | 154 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-33 | 54 | 154 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000209G0490 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107461 | 1e-143 | AK107461.1 Oryza sativa Japonica Group cDNA clone:002-129-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457638.1 | 1e-128 | transcription factor MYB117 | ||||
Swissprot | Q5NBM8 | 1e-107 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | C5XH76 | 1e-127 | C5XH76_SORBI; Uncharacterized protein | ||||
STRING | Sb03g010960.1 | 1e-128 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-57 | myb domain protein 105 |