PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000203G1150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NF-X1 | ||||||||
Protein Properties | Length: 758aa MW: 81594.6 Da PI: 7.6099 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 17.9 | 6.6e-06 | 26 | 43 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C CH+GpC++C PH01000203G1150 26 CGNHACLDVCHPGPCGEC 43 ****************** PP | |||||||
2 | zf-NF-X1 | 22.3 | 2.9e-07 | 84 | 101 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ +CHeG+CppC PH01000203G1150 84 CGVHRCKVTCHEGECPPC 101 ****************** PP | |||||||
3 | zf-NF-X1 | 16.8 | 1.4e-05 | 289 | 305 | 1 | 17 |
zf-NF-X1 1 CGkHkCqklCHeGpCpp 17 CG H C ++CH+ pC+p PH01000203G1150 289 CGLHACTRTCHPSPCDP 305 ***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd06008 | 2.92E-9 | 16 | 59 | No hit | No description |
Pfam | PF01422 | 2.6E-4 | 26 | 43 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0039 | 26 | 45 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.17E-12 | 74 | 122 | No hit | No description |
Pfam | PF01422 | 3.9E-6 | 84 | 101 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1.3E-4 | 84 | 103 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.25E-8 | 169 | 221 | No hit | No description |
Pfam | PF01422 | 0.0037 | 179 | 197 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.013 | 179 | 198 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 90 | 236 | 252 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.49 | 236 | 254 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0033 | 289 | 305 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.029 | 289 | 324 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 5.6 | 326 | 352 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.16 | 333 | 354 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MAVKGKLSEE DGVFSCSEAC GHMLACGNHA CLDVCHPGPC GECELMPEKV TTCHCGKTRL 60 QEKRASCLDP IPTCDMVCDK KLLCGVHRCK VTCHEGECPP CLVRVEQRCR CGSSGQMVEC 120 YKVLKEDFRC NKPCGQKKNC GRHRCSECCC PLSKPFAQLE GGNWDPHFCQ IPCGKKLRCG 180 QHGCQQLCHS GHCLPCRETI FNDLTCACGR TSIPPPLSCG TPTPSCPHQC LVPQPCGHPA 240 SHQCHFGDCP PCVVPVMREC IGGHVVLRNI PCGSKDIRCN QPCGKNRQCG LHACTRTCHP 300 SPCDPPPANG DASSSSGGKA SCGQVCGVPR RECKHTCTAP CHPSSPCPDL RCEFPVTITC 360 SCGRITATVP CGAGGTSSGD NMFEVSIIQK LPMPFQPVES NGRRVPLGQR KLSCDEECAK 420 MERKKVLAEA FDITTPNLDA LHFGENSNAS DLLSDLFRRE PKWVLAIEER CKFLVLGKTR 480 GNSSSNLKVH VFCHMMKDKR DAIRVIADRW KLSVQAAGWE PKRFVTIHVT PKSKPPARIL 540 GSKPGVPVTA SHPYFDPLVD MDPRLVVAML DLPRDADVSA LVLRFGGECE LVWLNDKNAV 600 AVFNDPARAA TALRRLDYGS AYQGAAMFLP SSSAQASSSG NVWVAAQNGG LAAKSSANPW 660 KKATASEPDL SSGDWTGVIG HAPGSVWSRG DTAAQVMGTQ NRWNVLESDA AMSSGPVDER 720 KPAPCTDAGS STEPNVGPLV SKMQPDIEVD DWEEACE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000203G1150 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643844.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | A0A0D3GEY0 | 0.0 | A0A0D3GEY0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G09580.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |