PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000202G0810
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 947aa    MW: 105901 Da    PI: 6.6729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000202G0810genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.2e-13489536148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W + Ed +l ++vk++G g+W+++ +   + R++k+c++rw ++l
  PH01000202G0810 489 KGPWAPSEDAILEEYVKKYGEGNWNAVQKNTTLLRCGKSCRLRWANHL 536
                      79******************************99**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF566727.34E-741260No hitNo description
CDDcd016472.71E-511128No hitNo description
Gene3DG3DSA:3.10.10.104.4E-10147No hitNo description
CDDcd092741.08E-38160273No hitNo description
PROSITE profilePS5129418.652484540IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-20486539IPR009057Homeodomain-like
SMARTSM007171.6E-12488538IPR001005SANT/Myb domain
PfamPF002492.2E-12489536IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-22490566IPR009057Homeodomain-like
CDDcd001671.35E-9491536No hitNo description
PROSITE profilePS500906.237537588IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-11540571IPR009057Homeodomain-like
SMARTSM007177.5541589IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MCIDYRQLNA NTIKNKYPIP VIEDLLDELH GAQVFSKIDL GSGYHQIKMI DEDVKKTAFS  60
THLGHYEFIA LMNEVLSQFL RKFTLVFFDD ILIYSKSIKE RGYHLTKVLE VLKNNNLYAK  120
MSKCAFGQNQ EAQNSTFLRL KEVMTKALVL ALPDHSQPFI LEADAFGYGI GAVLMQNHNL  180
IAFMSKALGS KAATFSTYDK EALAIIEALK KWKHCFAGTT SIIRTDQQSL RYIHEQKLTE  240
GIQHKLLIKL LGYNYKIEYK KGRENRAVDA LSRVVNGEQL RAISAAVPIW ITEVLHSYEQ  300
DEHYKELIRR LTVDPQAKPN YTLNGGILRV MERIGKVAYK LLLPDGCQLH PVFHQQHGRT  360
QTSFHESSWD IILEDKNILK GEEVVRTGCL KLNKRSLKLN KTEDKLKSNV ECCSVPTSLR  420
SDKFRRNDGD EAIQCNQEDP TLRNSKKDPD NYSAIRSSPA RIPLRFRLLK LGVLARGSPP  480
REAGLQLKKG PWAPSEDAIL EEYVKKYGEG NWNAVQKNTT LLRCGKSCRL RWANHLRPNL  540
KKGAFTKEEE NLIIKLHYDM GNKWAQMAAY ASNEDQHEST DSNFSEKLAD DPLHGNGLYV  600
PQLSDVSISN ILGQSFASKN YDIMDQVKQV KVLKESESSL PVLDVTNSGV FSSVDQSLNK  660
CEKLGQAFGF DSHDATNSID KTMAPSAGAF FESHAFSNGN FSASRPTTGP LKMELPSLQV  720
AESDPNNWSM HSRTSAVQPA NFADLCMHSL AATLSAKSEC MAPRNSGHLE ELLPEARVLS  780
SVENQQLPVG SLSSSAGTSC NAMMESSKLD HCEEFWEQDP NFYTLISSDF SASSLCPASP  840
DEFQHSEISP GWYSLFSSST DSVASSVIHL LLFICSTVPC GSSELIVPQH EQAIFSPHGE  900
DFKPDALFSW NTINSSIFND TIGMLLENDA ATDWQPPSCE TTVYPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ol8_A4e-251130115256Reverse transcriptase/ribonuclease H
4ol8_B4e-251130115256Reverse transcriptase/ribonuclease H
4ol8_E4e-251130115256Reverse transcriptase/ribonuclease H
4ol8_F4e-251130115256Reverse transcriptase/ribonuclease H
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000202G0810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39473664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-41myb domain protein 33