PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000201G0970
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 295aa    MW: 31665.7 Da    PI: 7.5457
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000201G0970genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-19112161255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+++t eeAa a++ a+ +l+g
  PH01000201G0970 112 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTSEEAALAYDSAAFRLRG 161
                      59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.57E-29111171No hitNo description
SMARTSM003804.0E-36112175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-32112170IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-22112170IPR016177DNA-binding domain
PROSITE profilePS5103223.354112169IPR001471AP2/ERF domain
PfamPF008477.3E-15113161IPR001471AP2/ERF domain
PRINTSPR003671.3E-10113124IPR001471AP2/ERF domain
PRINTSPR003671.3E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MATAMDRQWR CLAASTATSR LLASPPLGAM EYRELVHALA APVQAAAPAA PFMDVEQSPA  60
VVLGTNYYHL ITPAQVAHFR CLRRPGGGRV GPASCSMKRR GLALWPAPAA KLYRGVRQRH  120
WGKWVAEIRL PRNRTRLWLG TYDTSEEAAL AYDSAAFRLR GDAARLNFPE LRRGGQHLAP  180
PLHPSVDAKL QATMTSAAAS SATETPPAPA SPPSETVGIK NEPGCSGSEA STTTTADAAD  240
VSSTDSSSSS SSEQATPPLP EMQLLNFSEA PWDEADGFAL RKYPSWEIDW DAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19110169363ATERF1
3gcc_A2e-19110169363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000201G0970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0984940.0FP098494.1 Phyllostachys edulis cDNA clone: bphyem124a13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983222.11e-119ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E42e-52RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1E5UNC71e-125A0A1E5UNC7_9POAL; Ethylene-responsive transcription factor RAP2-13
STRINGSi036893m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-46related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]