PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000193G1220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 304aa    MW: 31909.8 Da    PI: 8.9291
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000193G1220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.44.9e-18130184256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  PH01000193G1220 130 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 184
                      788899***********************************************98 PP
2HD-ZIP_I/II124.45.2e-40130219191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
  PH01000193G1220 130 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCERLTEENRRLQRELQELR-AL 219
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-18121185IPR009057Homeodomain-like
SuperFamilySSF466899.61E-19124187IPR009057Homeodomain-like
PROSITE profilePS5007117.232126186IPR001356Homeobox domain
SMARTSM003897.8E-16128190IPR001356Homeobox domain
CDDcd000864.11E-16130187No hitNo description
PfamPF000462.2E-15130184IPR001356Homeobox domain
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
CDDcd146860.00718179218No hitNo description
PfamPF021831.1E-10186220IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.6E-23186229IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAQEDVLHLS DPGLALGLSL GGGGGGGGGT SNASAAAHHS NSRARRGAAP PTSTQCPLEP  60
SLTLSMPDDA TVTATASGGG GAHSVSSLSM GAVKRERVEE ADQGERVSST AAARGAAGAG  120
AEDDDDGSTR KKLRLTKEQS ALLEDRFKEH STLNPKQKVA LAKQLNLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEFLKRCCE RLTEENRRLQ RELQELRALK FAPPPPLSAA AAQHATPPHS  240
AAAVPAPPFY MQLPAATLTI CPSCERLGGP APAAAKVDPD RPKAGPGRTT HHFFNPFTHS  300
AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134TRKKLRL
2178186RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000193G1220
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977880.0FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627844.11e-119homeobox-leucine zipper protein HOX19 isoform X2
SwissprotA2XE761e-121HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-121HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A0E0KAW71e-121A0A0E0KAW7_ORYPU; Uncharacterized protein
STRINGOPUNC03G09020.11e-122(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-49HD-ZIP family protein