PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000193G0900
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 613aa    MW: 65456.2 Da    PI: 6.2922
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000193G0900genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323e-103774181055
              AP2  10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      k  grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PH01000193G0900 377 K-HGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 418
                      4.7******988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.64267360IPR001471AP2/ERF domain
PRINTSPR003672.6E-5268279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-9307361IPR001471AP2/ERF domain
SMARTSM003801.5E-4310366IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-8314361IPR016177DNA-binding domain
CDDcd000181.06E-10330361No hitNo description
PROSITE profilePS5103216.002349426IPR001471AP2/ERF domain
CDDcd000183.05E-20374428No hitNo description
SMARTSM003804.6E-24374432IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-14375427IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-14377426IPR001471AP2/ERF domain
PfamPF008472.3E-5377418IPR001471AP2/ERF domain
PRINTSPR003672.6E-5408428IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MANGGNWLGF SLSPHMAMEV PSSSEPASAH PPPPASALSS SSNNATTCNF LFSPPAQMAA  60
PSPGYYYVGG AYGDGTTGVY YSHLPVMPTK SDGSLCNMEG MMPSSSPKLE DFLGGGNGSG  120
HDTANYYSHH QGQEEEASRA TYPHHHQLVP YNFQPLTEAE MLQEAAVPME EAMAAAKNFV  180
VTSYGACYSN GEMQPLSLSM SPGSQSSSCV SAAPQQHQIQ MAVVAAQGGS NGGGEQFAGK  240
KRGTGKGGQK QPVHRKSIDT FGQRTSQYRG VTSKSFDSFV EALFILNDEG TGGLGDMKPT  300
SGITVAKRMV RQGKEDKVVS RFLNFSSRAL GGYDTEDKAA RAYDLAALKY WGPSTHINFP  360
EKQWVFSWCF NLPRSYKHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN  420
AVTNFDITRY DVDKIMESNS LLPGEAARKV KAIEAADDVS LMQNSGRELI PAEEASATGT  480
DWRMVLHGSP QQAVPCADVT DLQKGIMGDP HSSLHGIVEL DVESAAHDID VSGKIGGINF  540
SNSSSLVTSL SNSREGSPER LGLAMLYAKH PNAVSLASMS PWMPMPVPTA TPALRPPNAI  600
THLPVFAAWT DA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000193G0900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690535.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A0A9LT820.0A0A0A9LT82_ARUDO; Uncharacterized protein
STRINGOB03G19620.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-56AP2 family protein