PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000188G0980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 306aa MW: 32582.8 Da PI: 7.0549 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.3e-20 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p +kr+r +lg+f taeeAa a+++a+++l+g PH01000188G0980 27 EYRGVRQRT-WGKWVAEIREP---NKRTRLWLGSFATAEEAALAYDEAARRLYG 76 69****999.**********9...337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.60E-28 | 26 | 86 | No hit | No description |
Pfam | PF00847 | 6.5E-14 | 27 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-21 | 27 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.326 | 27 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-36 | 27 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 27 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MESYGRKRAW KKGPTRGKGG PQNAACEYRG VRQRTWGKWV AEIREPNKRT RLWLGSFATA 60 EEAALAYDEA ARRLYGPSAF LNLPHLRAAS AATAHQRLRW LPASTRGAVA AVPAYGLLNL 120 NAQHNVHVIH QRLQELKNSS SPTKPPRTPP PPPARAHLPL LPSTSPCSTV TTNAPASAAL 180 PPPMSCFHAL EQAMSAVDSA PCDAAAGVGV DKPQLDLKEF LQQIGVLKAD EDGAAGKEDI 240 HGDGEVADAF GFCGNGEFDW DALAADMSGI AGGHGGAVGI NGGFQMDELH EVDQFGYMPI 300 PIWDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-16 | 28 | 84 | 6 | 63 | ATERF1 |
3gcc_A | 1e-16 | 28 | 84 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00411 | DAP | Transfer from AT3G57600 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000188G0980 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 1e-171 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021309128.1 | 1e-150 | dehydration-responsive element-binding protein 2E-like | ||||
Swissprot | Q10R18 | 1e-142 | DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E | ||||
TrEMBL | A0A0E0K9F4 | 1e-151 | A0A0E0K9F4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC03G05230.1 | 1e-152 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9575 | 29 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57600.1 | 3e-49 | ERF family protein |