PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000185G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 358aa    MW: 38720.3 Da    PI: 7.5729
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000185G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.45.2e-31222277156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rF+ a+++LGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  PH01000185G0030 222 KARRCWSPELHRRFLAALHRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 277
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.624219279IPR017930Myb domain
SuperFamilySSF466891.88E-17220280IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28220280IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-26222277IPR006447Myb domain, plants
PfamPF002491.5E-7224275IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGSSVQKETV GDVDLRLLAA RTVTDSLRAA LSRSSAGEKA ARFEECIRSL EAEKAKMEVF  60
RRELPFSVHL IGDVIEWLKD EVEQHRRPAP EMFALASAPA AKRKAEEKVG GVKTEVDAND  120
KRSWMSSAQL WSCGSHNSTS NSNGGSVKKQ AQKVPNAFMP LNGLPTFAKS PEKPEKAAMP  180
PVPDLSLSSP EIDTPCPVAA PSANSSAITD AGAQLQQPVQ RKARRCWSPE LHRRFLAALH  240
RLGGPQAATP KQIRELMKVD GLTNDEVKSH LQKYRLHTRR ASDGDQQAAG LWPPPEQYTT  300
SQHSTSQSGS PQGPLRLTVS SRGAGDSCEG GEEEEEDGKS ESYSWEMENG AKAPSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-13222275154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-13222275154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-13222275154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-13222275154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000185G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151221.11e-170myb family transcription factor EFM-like
TrEMBLA0A3B6MLQ61e-169A0A3B6MLQ6_WHEAT; Uncharacterized protein
STRINGTraes_5DS_13C2391DC.11e-164(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.14e-29G2-like family protein