PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000183G1320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 34866.8 Da PI: 9.3405 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.4 | 1.1e-52 | 13 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhP+d+el+++yL +kv+gk +++ + + +vd+++vePwdLp + ++++ewyfFs rd+kyatg+r+nrat sgyWkatgkd+ PH01000183G1320 13 LPPGFRFHPRDDELICDYLVPKVSGKAgFSARRPpMVDVDLNRVEPWDLPaVASVGGKEEWYFFSLRDRKYATGQRTNRATVSGYWKATGKDRV 106 79************************987776667***************434445677**********************************9 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 v + +++lvg++ktLvfy+grapkg+kt+Wvmheyrle PH01000183G1320 107 VAR-RRALVGMRKTLVFYQGRAPKGKKTEWVMHEYRLE 143 999.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-58 | 2 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.074 | 13 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-27 | 14 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MSMSFLSMVE AELPPGFRFH PRDDELICDY LVPKVSGKAG FSARRPPMVD VDLNRVEPWD 60 LPAVASVGGK EEWYFFSLRD RKYATGQRTN RATVSGYWKA TGKDRVVARR RALVGMRKTL 120 VFYQGRAPKG KKTEWVMHEY RLEGAHEQAS RFTSKEDWVL CRVICKKKSG GGGATSRPRN 180 LTTIGHDTST ATSSPPLPPL TDTTLAQLQA TMNTTTTTSA AALEQVPCFS SFNNNIASYN 240 NSATVVQPCY LPMVTGSNGL NYLDGLPDFG SFLDPALNCD KKMLKAVLSQ LSSMGGEVMP 300 SLLPDMAAAV SSTGMNHF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-47 | 8 | 169 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-47 | 8 | 169 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-47 | 8 | 169 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-47 | 8 | 169 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-47 | 8 | 169 | 15 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-47 | 8 | 169 | 15 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-47 | 8 | 169 | 15 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-47 | 8 | 169 | 15 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-47 | 8 | 169 | 15 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-47 | 8 | 169 | 15 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-47 | 8 | 169 | 15 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-47 | 8 | 169 | 15 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-47 | 8 | 169 | 12 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-47 | 8 | 169 | 12 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000183G1320 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091423 | 0.0 | FP091423.1 Phyllostachys edulis cDNA clone: bphyem111l23, full insert sequence. | |||
GenBank | FP099211 | 0.0 | FP099211.1 Phyllostachys edulis cDNA clone: bphyem206i06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577546.1 | 0.0 | NAC domain-containing protein 21/22 isoform X2 | ||||
Swissprot | Q84TE6 | 5e-85 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0Q3GYD2 | 0.0 | A0A0Q3GYD2_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G02060.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10022 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-79 | NAC domain containing protein 1 |