PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000183G0940
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 1288aa    MW: 139540 Da    PI: 6.41
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000183G0940genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.87.9e-082368445
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVk 45
                       ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+k
  PH01000183G0940 23 YVRYTPEQVEALERVYTECPKPSSLRRQHLIRECpilsNIEPKQIK 68
                     6789****************************************98 PP
2START172.23.4e-541923992204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+++l
  PH01000183G0940 192 IAEETLAEFLSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVIPTGngGTIEL 284
                      68999*****************************************************.8888888888************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      ++++++a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   +++++Rae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+
  PH01000183G0940 285 IYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCEGGGSMIHMVDHVDLDAWSVPEVLRP 378
                      ***********999****************************9999999********************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s  + ++k++ a+l++ +
  PH01000183G0940 379 LYESPKILAQKMTIAALRHIR 399
                      ****************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.14E-52167IPR009057Homeodomain-like
CDDcd000864.36E-62268No hitNo description
PfamPF000461.8E-52368IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-72468IPR009057Homeodomain-like
CDDcd146869.29E-597134No hitNo description
PROSITE profilePS5084826.76182382IPR002913START domain
CDDcd088753.34E-67186402No hitNo description
Gene3DG3DSA:3.30.530.201.2E-24190382IPR023393START-like domain
SMARTSM002348.2E-47191401IPR002913START domain
PfamPF018525.6E-52192399IPR002913START domain
SuperFamilySSF559614.26E-38192402No hitNo description
PfamPF086701.8E-33798912IPR013978MEKHLA
PfamPF041959.9E-810251081IPR007321Transposase (putative), gypsy type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1288 aa     Download sequence    Send to blast
MAAVGSKEKL SPGAAPQVDT GKYVRYTPEQ VEALERVYTE CPKPSSLRRQ HLIRECPILS  60
NIEPKQIKFG TFAVEGVLMG WIGGKKARYS DLLLKGCREK QRKEASRLQT VNRKLTAMNK  120
LLMEENDRLQ KQVSRLVYEN GYMRNQLHNP SVATTDTSCE SVVTSGQHHQ QQNPAAPHPQ  180
RDANNPAGLL AIAEETLAEF LSKATGTAVE WVQMVGMKPG PDSIGIIAVS HNCSGVAARA  240
CGLVSLEPTK VAEILKDRPS WYRDCRCVDI LHVIPTGNGG TIELIYMQTY APTTLAAPRD  300
FWTLRYTSGL EDGSLVICER SLTQSTGGPS GPNTPNFIRA EVLPSGYLIR PCEGGGSMIH  360
MVDHVDLDAW SVPEVLRPLY ESPKILAQKM TIAALRHIRQ IAHESSGEIP YGAGRQPAAW  420
SVPEVLRPLY ESPKILAQKM TIAALRHIRQ IAHESSGEIP YGAGRQPAVL RTFSQRLSRG  480
FNDAVSGFPD DGWSLLSSDG AEDITISVNS SPNKLIGSHV SPSPLFSAIG VGILCAKASM  540
LLQNVPPALL VRFLREHRSE WADPGVDAYS AASLRASPYA VPGLRASGFM GSQVILPLAH  600
TLEHEEFLEV IRLEGHGFSH DEVLLSRDMY LLQLCSGVDE NAAGACAQLV FAPIDESFAD  660
DAPLLPSGFR VIPLDAKTDV PSATRTLDLA SALEVGSGGA SRALSDASGT CNMRSVLTIA  720
FQFSFENHLR ESVAAMARQY VRAVMASVQR VAMAIAPSRL GSQIEMKHPP GSPEALTLAS  780
WIGRSYSTVS EVVDTGETFR VHTGGEIHWS DTEDVDSPLK LLWKHSDAIL CCSLKAAPMF  840
TFANKAGLDI LETTLINLQD ISLETILDDE GRKALCSEFP KIMQQGFAYL PGGVCKSSMG  900
RQASYEQAVA WKPGLLRTPF ECSLSFLRLS LRKTLQSLRV TLRVPLVPLG RLFEGLGSPS  960
GYLLYPSGES SEPSGEDSLR CGRDAAGETE YTSDLGRSTV SRLFLETLVS EGKLEDIMKV  1020
RAPGSETVPH PRDDEAIVFV AFLDAGLRIP CVDLVSEVLR LYRVELAQLT PNSIVKLGVF  1080
EWMLRSAGIA AEEVVPVAEA VRVADVLLGL YTGEEHSRHH LVVRDRRLNR AYDVSVDLPE  1140
RVDPDAGKKK RSRMPEIEVG GPIAVKPLRV VRPSDGGGPS RHLEAAEERP SRGPVPDKAI  1200
GTIRYPRLDA TESSSGGLRS RGDGRNLEVP GDAPATSEVN VVSSGDGGND EIAEASEGRA  1260
PMGSEPDPAV LRAILGKSQI TKHQSLT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000183G0940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021830.0AK102183.1 Oryza sativa Japonica Group cDNA clone:J033086M14, full insert sequence.
GenBankEU3687120.0EU368712.1 Oryza sativa Indica Group SKIP interacting protein 22 (SIP22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577453.10.0homeobox-leucine zipper protein HOX33
SwissprotA2ZMN90.0HOX33_ORYSI; Homeobox-leucine zipper protein HOX33
SwissprotQ2QM960.0HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33
TrEMBLA0A0Q3EHP90.0A0A0Q3EHP9_BRADI; Uncharacterized protein
STRINGOMERI12G14090.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Luan W, et al.
    Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.
    Sci China Life Sci, 2013. 56(12): p. 1113-23
    [PMID:24302292]