PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000179G0630
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 267aa    MW: 28651.5 Da    PI: 4.7987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000179G0630genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-1266110655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +Er RR+++N+++  +r+++P+      +K++Ka+i + A++YI++Lq
  PH01000179G0630  66 ILMERDRRRNLNEKLYAIRSVVPNI-----TKMDKASIIKDAIDYIQQLQ 110
                      579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.30760109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.77E-1364114No hitNo description
SuperFamilySSF474591.3E-1664125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-1065110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-1566115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1666126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDADMGDSFA FYWETQRYLE SEELVDSIYY DSSSPDGSHS SSTPVAAAMA GAGAGMAGAV  60
GANKNILMER DRRRNLNEKL YAIRSVVPNI TKMDKASIIK DAIDYIQQLQ AQERHMLAEV  120
SALESAAAAA AADEYDDGTL SSLASSAQRK KVKRALSVSS IKGALLAATS PPVEVLELRV  180
SEVGDKVLVV SVTCSKQRDT MAKVCRLLEE LRLRVITANI TSVSGCLMHT LFVEVDHMDS  240
IQMKEMVEAA LSQADATGSP PSSMSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000179G0630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160196.11e-120transcription factor bHLH35-like
TrEMBLA0A3B6AXQ31e-132A0A3B6AXQ3_WHEAT; Uncharacterized protein
TrEMBLA0A446L1521e-132A0A446L152_TRITD; Uncharacterized protein
STRINGTraes_2AL_411B944D6.11e-133(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-42bHLH family protein