PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000177G0520

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 406aa MW: 45370.2 Da PI: 8.0382

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000177G0520	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.2e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 l pGfrFhPtdeelv++yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++r +ky+++ r+nr+t +g+Wkatg+d++++s PH01000177G0520 14 LLPGFRFHPTDEELVSFYLKRKIQQKPLSI-ELIRQLDIYKYDPWDLPKLASSGEKEWYFYCPRGRKYRNSARPNRVTGAGFWKATGTDRPIYS 106 579*************************.89***********8888999*********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +glkk+Lvfykgrapkg ktdW+mhe+rl PH01000177G0520 107 SeGTKCIGLKKSLVFYKGRAPKGIKTDWMMHEFRL 141 956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-58	10	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.28	14	172	IPR003441	NAC domain
Pfam	PF02365	3.7E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MDERSDTDKS EEVLLPGFRF HPTDEELVSF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP 60 KLASSGEKEW YFYCPRGRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV 120 FYKGRAPKGI KTDWMMHEFR LHSLTDPSLP KIPIDKNIPA NDAWAICRIF KKPSSMAQRA 180 LSHSWGPQST ATTEPDLLSA LQSIQASHFA LESSSCSAEV PIPANRFNSQ QWLQGRQQQK 240 LNSSQDRSSC KVINFNCSAS LTHLSDKDIH SSPIILPFET QSLQKSSDVT AVLLSTAPGI 300 INGMNEASPN TEFGQPEPFN GYAVDWVIDT NGGIGNRDDD PYTRKPGKGY STGNGCGIPR 360 KIKFPFDLGL DSSDDWTCNM PCESLPCPTP PTEMSKLCST EKYYA*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MDERSDTDKS EEVLLPGFRF HPTDEELVSF YLKRKIQQKP LSIELIRQLD IYKYDPWDLP  60
KLASSGEKEW YFYCPRGRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGT KCIGLKKSLV  120
FYKGRAPKGI KTDWMMHEFR LHSLTDPSLP KIPIDKNIPA NDAWAICRIF KKPSSMAQRA  180
LSHSWGPQST ATTEPDLLSA LQSIQASHFA LESSSCSAEV PIPANRFNSQ QWLQGRQQQK  240
LNSSQDRSSC KVINFNCSAS LTHLSDKDIH SSPIILPFET QSLQKSSDVT AVLLSTAPGI  300
INGMNEASPN TEFGQPEPFN GYAVDWVIDT NGGIGNRDDD PYTRKPGKGY STGNGCGIPR  360
KIKFPFDLGL DSSDDWTCNM PCESLPCPTP PTEMSKLCST EKYYA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-53	14	175	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-53	14	175	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-53	14	175	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-53	14	175	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	6e-53	14	175	20	171	NAC domain-containing protein 19
3swm_B	6e-53	14	175	20	171	NAC domain-containing protein 19
3swm_C	6e-53	14	175	20	171	NAC domain-containing protein 19
3swm_D	6e-53	14	175	20	171	NAC domain-containing protein 19
3swp_A	6e-53	14	175	20	171	NAC domain-containing protein 19
3swp_B	6e-53	14	175	20	171	NAC domain-containing protein 19
3swp_C	6e-53	14	175	20	171	NAC domain-containing protein 19
3swp_D	6e-53	14	175	20	171	NAC domain-containing protein 19
4dul_A	6e-53	14	175	17	168	NAC domain-containing protein 19
4dul_B	6e-53	14	175	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000177G0520

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005397	4e-49	AP005397.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0643D11.
GenBank	AP014965	4e-49	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757877.2	0.0	LOW QUALITY PROTEIN: protein FEZ
Swissprot	Q9ZVH0	1e-97	FEZ_ARATH; Protein FEZ
TrEMBL	I1IQ38	0.0	I1IQ38_BRADI; Uncharacterized protein
STRING	BRADI4G30177.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-100	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]