PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000176G0870
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 588aa    MW: 64319.1 Da    PI: 7.8918
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000176G0870genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.83.7e-31267321155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rlrWt eLHerF++av++L G+ekAtPk +l+lmkv+gLt++hvkSHLQkYRl
  PH01000176G0870 267 KARLRWTLELHERFMDAVNKLEGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRL 321
                      68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.125264324IPR017930Myb domain
SuperFamilySSF466893.05E-16265321IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29265322IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23267322IPR006447Myb domain, plants
PfamPF002491.1E-7269320IPR001005SANT/Myb domain
PfamPF143795.0E-22357403IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MSSQSVVAVK QIAAPDKTVL GCTSTQPSVH KLFDAKLDHQ GLMDDNLSST TQSSNIKNEL  60
IRLSSLPKSL PFNVQKRSPE SDPESPPSQI SHPKFSDPIF SNSSTFCTSL FSSSSTNSEP  120
CRQMGTLPFL PHPPKCEQQV SAGQSSSSSL LLNGDIGNAH DEAEHSDDFE DFLNLSGDAS  180
DGSFHGENNA LAFAEQMEFQ LLSEQLGVAV TDNEESPRLD DIYGTPLQLS SLPVSSCSNQ  240
GLQNIGSPVK VQLSSSRSSS GSATTNKARL RWTLELHERF MDAVNKLEGP EKATPKGVLK  300
LMKVEGLTIY HVKSHLQKYR LAKYLPETKE DKKASSEDKK AHSSSSENDS GKKKNLQVAE  360
ALRMQMEVQK QLHEQLEVQR QLQLRIEEHA RYLQRILEEQ QKARSSVSLK NPTDAQAGLP  420
ESTSKEKTDS EAATTSPQPS KNRAPDADAD AECSSPVDKK RAKVHADLDF LVRASAPSLP  480
VEVVAPLGPG VPAVVLARRR RLPQRRRAPA EPAALDQDRV HLFLGAARET YGFRWGRTDL  540
GPRGFERGFR GPEAVDVVDA RWSHGGMGKI GKRGWGGCVR MISGRKW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-24267324259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-24267324259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-24267324158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-24267324158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-24267324158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-24267324158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-24267324259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-24267324259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-24267324259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-24267324259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-24267324259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-24267324259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000176G0870
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812859.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_025812860.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_025812862.10.0protein PHOSPHATE STARVATION RESPONSE 3
RefseqXP_025812863.10.0protein PHOSPHATE STARVATION RESPONSE 3
SwissprotQ6YXZ40.0PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLA0A3L6PFL70.0A0A3L6PFL7_PANMI; Uncharacterized protein
STRINGPavir.J27649.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.26e-70G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]