PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000173G0700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 23489.7 Da PI: 10.3963 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.2e-20 | 105 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr+++ +g+W+AeIrdp + r +lg+f+tae+Aa+a++ a+++++g PH01000173G0700 105 SRFRGVRQRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEQAARAYDVAALEFRG 155 789*******.**********7.....338*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.5E-22 | 105 | 164 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-13 | 105 | 155 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.185 | 106 | 163 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 106 | 164 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-36 | 106 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-11 | 107 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.97E-26 | 112 | 163 | No hit | No description |
PRINTS | PR00367 | 7.2E-11 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVPRLERAAG FQLPNTEQEN SLFLRALISV VSGDTTVPAL HPESAPPVAS AAAAACARCG 60 ADGCLGCESF AADAKAATGS SCEEEECSAN CVKGGVGKRR RGRGSRFRGV RQRPWGKWAA 120 EIRDPHRAVR KWLGTFDTAE QAARAYDVAA LEFRGQRAKL NFPAAAASSA SASASAHASI 180 LQTPDSRTIL LCKLRPTRSR RPKLAANSRA MESGVLWLVN I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 103 | 163 | 2 | 63 | ATERF1 |
3gcc_A | 1e-20 | 103 | 163 | 2 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000173G0700 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 1e-75 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624274.1 | 4e-72 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A3B6NU93 | 1e-72 | A0A3B6NU93_WHEAT; Uncharacterized protein | ||||
STRING | OS02T0764700-01 | 2e-71 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 7e-24 | ERF family protein |