PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000171G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family STAT
Protein Properties Length: 781aa    MW: 86139.5 Da    PI: 5.537
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000171G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT185.37.9e-582723901118
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                      l+vvl++a+g+pv+kd++vvasL+yad+g+vveks dd+e+pLLi+++G+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri+f+++  +
  PH01000171G0150 272 LEVVLIDAFGEPVNKDTQVVASLVYADNGAVVEKSrDDSEPPLLITCEGLEYPAKSRPLPIIRGRALFKLKISQLSSKCDNKLFRIYFSTLYTR 365
                      79*********************************9********************************************************** PP

             STAT  94 kypfleavskpirCisrsrntrsss 118
                       ypflea sk+irCisr+r++r+++
  PH01000171G0150 366 IYPFLEASSKSIRCISRNRTSRPLG 390
                      *********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498992.18E-536155IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555501.21E-5649732IPR000980SH2 domain
PROSITE profilePS500018.862653760IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MAAPECGGIE GYCGLRDMRV ELDLGMARGD GVGGKGGGFA VCFWLYLSGS ARPSSVILHQ  60
ITAGDDSKLP FLALSEGNKL LLFPLLRLHR EAPTPASSYP WTDTTNLLAV KECHLEKWIH  120
IGCEVTESVM RLHIDGKLVA EAHLCSLSNE PDNQNDANQI SLVGSNDKLE GYVYNIQNPP  180
FKLSIDYSCC DGIEEGDDGI WSIVGGKASC RRNFILEVVL IDAFGEPVNK DTQNPPFKLS  240
IDYSCCDGIE EGDDGIWSIV GGKASCRRNF ILEVVLIDAF GEPVNKDTQV VASLVYADNG  300
AVVEKSRDDS EPPLLITCEG LEYPAKSRPL PIIRGRALFK LKISQLSSKC DNKLFRIYFS  360
TLYTRIYPFL EASSKSIRCI SRNRTSRPLG FGKRAGSATM DVIHSLNNGQ GSGHDGKANC  420
RFQSHDQRSV VCLHPSKISK VQGDGMDTHK MVSQNKQVRK MVVGIEAQNA SGTDSATSDS  480
DSIDARSSWS GSDRDEVETF SDAMIFRYCL EGTYERSAFL RDAAVSVDED DLVKLAIQVS  540
LYSGCSHHRN QILMSKQLLQ EGADTWSIIS KNKERALWSS AVPEIITKFM DVSHSTNRGL  600
SEQDLEVLRG IAGCGDDLGR DEFDRLWHWL YPVAASLSKD KINKLWDCAE PRWIEGLVTI  660
DKAENALRSS RELLKKPGTF VLRFPTTRSW PHPDAGSLVV TYVGSDNSIH HRLLSFDVSD  720
ASSGNLQDLL LQEPELSQLG RQAHCISFTQ TFLNCLIDII LIPTQFECSR VDRLPTAMQS  780
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000171G0150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194163.10.0uncharacterized protein LOC109779975 isoform X2
TrEMBLA0A452YUV10.0A0A452YUV1_AEGTS; Uncharacterized protein
STRINGTraes_1AL_8BC434C02.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.11e-143SH2 domain protein A