PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000164G0530

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 405aa MW: 44239.1 Da PI: 5.4317

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000164G0530	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	65.8	7.7e-21	250	295	1	46
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 k+rlrWt eL erFveav++L G+ekAtPk +l+lmkv+gLt++h PH01000164G0530 250 KARLRWTMELNERFVEAVNKLEGPEKATPKGVLKLMKVEGLTIYHF 295 68******************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.1E-19	248	294	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.73E-8	248	294	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-14	250	294	IPR006447	Myb domain, plants
Pfam	PF14379	3.0E-22	334	380	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MSSHSVVAVK QVAAPDKTVH ACTSTQPSVH KLLDTKLDHQ GLMDASQSSN IKTELIQSSS 60 LPKSLPFNLQ KRSPESDPEK PIFSNSSTFC TSLFSSSSTN SVPCRQMGTL PFLPHPPKCE 120 QQVSAGQSSS SSLLLNGDIG NDHDESEQSD DLKDFLNLSG DASHGSFHGE DNASAFAEQM 180 EFQFLSEQLG IAITDNEESP RLDDIYGAPP QLSSLPVSSC ANQGLQNIGS PVKVQLSSSQ 240 SSSGSATTNK ARLRWTMELN ERFVEAVNKL EGPEKATPKG VLKLMKVEGL TIYHFYHSKL 300 AYSMYYVDKK ASSEDKKAQS SSSGNDSGKT KNLQVAEALR MQMEVQKQLH DQLEVQRQLQ 360 LRIEEHARYL QKILEEQQKT SNSLSLKNPT EAQAESPESA SNED*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MSSHSVVAVK QVAAPDKTVH ACTSTQPSVH KLLDTKLDHQ GLMDASQSSN IKTELIQSSS  60
LPKSLPFNLQ KRSPESDPEK PIFSNSSTFC TSLFSSSSTN SVPCRQMGTL PFLPHPPKCE  120
QQVSAGQSSS SSLLLNGDIG NDHDESEQSD DLKDFLNLSG DASHGSFHGE DNASAFAEQM  180
EFQFLSEQLG IAITDNEESP RLDDIYGAPP QLSSLPVSSC ANQGLQNIGS PVKVQLSSSQ  240
SSSGSATTNK ARLRWTMELN ERFVEAVNKL EGPEKATPKG VLKLMKVEGL TIYHFYHSKL  300
AYSMYYVDKK ASSEDKKAQS SSSGNDSGKT KNLQVAEALR MQMEVQKQLH DQLEVQRQLQ  360
LRIEEHARYL QKILEEQQKT SNSLSLKNPT EAQAESPESA SNED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-17	250	294	2	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-17	250	294	2	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-17	250	294	2	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-17	250	294	2	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-17	250	294	2	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-17	250	294	2	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-17	250	294	2	46	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-17	250	294	2	46	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000164G0530

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644151.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Swissprot	Q6YXZ4	1e-155	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	I1Q513	0.0	I1Q513_ORYGL; Uncharacterized protein
STRING	ORGLA06G0222600.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-67	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]