PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000160G0940
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 546aa    MW: 60438.8 Da    PI: 8.0448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000160G0940genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-1659103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++l+++a +++G   W++I +++g ++t+ q++s+ qk+
  PH01000160G0940  59 REKWTEDEHKLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.74E-1553106IPR009057Homeodomain-like
PROSITE profilePS5129420.31854108IPR017930Myb domain
TIGRFAMsTIGR015572.7E-1557106IPR006447Myb domain, plants
SMARTSM007173.8E-1358106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-959101IPR009057Homeodomain-like
PfamPF002492.3E-1459102IPR001005SANT/Myb domain
CDDcd001674.73E-1061104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MVRFQETKER DDQRPVADHV GHQNLMENLR NPLNSSDMDM LAEARVPKAR KAYTITKQRE  60
KWTEDEHKLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVIRE SSGDNSSSSG  120
AAPPVQIPPP RPKRKPVHPY PRKLGNAPGK HVPALRQLEK PQLQIQTLCE QEKGSPTSVL  180
TTAQIGSETL GSDSGGSPAS TIDIERCPTP SIATAELAVQ VRHTNVKEAK GNTTSKEVAC  240
DRSEAPVLRL FGKRVVLNGL HQPTNLNTRN LHDVVDMELD ASAETPTSGT GKFSSHGAAE  300
ANTWSPWLTN TQQFLYYLPL GDVFSVHSAL PCFSYNNGSE PCPPKAVNSN QQHQHQQPQA  360
VDCKIKQREG SWTESNAASS SVPETATQNS DSAESCTKAN GSEDEMVPVP GLRKCVSPAS  420
IGQRGFVPYK RCAAESEVLQ SKMTRTDVLR EGRSSVTDER QVETTLVFHK WKISCDSGMP  480
IQMNFLFELA SYSVLAPGHA QSSDLPLCNL NKDYSAIQEL RKMQRNCRYQ LDYRALPPEE  540
SDTDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000160G0940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636284.10.0uncharacterized protein LOC4336779
TrEMBLL0P1M20.0L0P1M2_9POAL; PH01B001I13.25 protein
STRINGORUFI04G24740.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-31MYB_related family protein