PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000155G0570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | TCP | ||||||||
Protein Properties | Length: 238aa MW: 26210.3 Da PI: 7.8652 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 98.2 | 1.5e-30 | 61 | 167 | 3 | 92 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ ++ ++s +++++s g PH01000155G0570 61 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDFMghLPSSMPLMQDENSLGmvsgam 154 78*************************************************************9999977765555555555544444666666 PP TCP 89 .........kaak 92 ++++ PH01000155G0570 155 pynyageswNNSS 167 6666666653333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.951 | 62 | 120 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.3E-27 | 62 | 125 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSGVQRIIDD ERRRVRMISG SQQQQQQQTT DEELARKHTA AVATSRQWSA QTESRIVRVF 60 GGKDRHSKVK TVKGLRDRRV RLSVPTAIQL YDLQDRLGLN QPSKVVDWLL NAARHEIDKL 120 PPLQFPPQDF MGHLPSSMPL MQDENSLGMV SGAMPYNYAG ESWNNSSVHE CGAGSPQVAA 180 AAPAAHHSPF PSLLSLAPGS HQLVFYSSEA EQFPVDNLDS QSLSLSSARA FHDQTGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-19 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-19 | 67 | 121 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000155G0570 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085548 | 1e-117 | BT085548.1 Zea mays full-length cDNA clone ZM_BFc0031O04 mRNA, complete cds. | |||
GenBank | BT085813 | 1e-117 | BT085813.1 Zea mays full-length cDNA clone ZM_BFc0067G09 mRNA, complete cds. | |||
GenBank | BT086223 | 1e-117 | BT086223.1 Zea mays full-length cDNA clone ZM_BFc0133E08 mRNA, complete cds. | |||
GenBank | EU970217 | 1e-117 | EU970217.1 Zea mays clone 342355 TCP family transcription factor containing protein mRNA, complete cds. | |||
GenBank | KJ728008 | 1e-117 | KJ728008.1 Zea mays clone pUT6143 TCP transcription factor (TCP30) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168249.1 | 5e-97 | uncharacterized protein LOC109753738 | ||||
TrEMBL | A0A0A9B7Y0 | 1e-102 | A0A0A9B7Y0_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J15913.1.p | 4e-95 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 3e-38 | plastid transcription factor 1 |