PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000152G0240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | G2-like | ||||||||
Protein Properties | Length: 193aa MW: 21357.3 Da PI: 9.6006 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.3 | 2.3e-30 | 19 | 69 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprlrWtp+LHerFv+av++LGG++kAtPk++l++m +kgLtl+h+kSHLQ PH01000152G0240 19 KPRLRWTPDLHERFVDAVTKLGGPDKATPKSVLRMMRMKGLTLYHLKSHLQ 69 79************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 16 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.455 | 16 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-13 | 19 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.7E-22 | 19 | 70 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-8 | 21 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-11 | 63 | 94 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEGSYGGGAG AVALSRDPKP RLRWTPDLHE RFVDAVTKLG GPDKATPKSV LRMMRMKGLT 60 LYHLKSHLQV QKKLQMRIEA QGRYLKAILE KAQKNISFDA NGAANLESTR SQLMDFNLAL 120 SGFMDNATRV YEENSEQLVK AITDDNLKAN NLGFQLNHVG NQEAKDVKCT PKTEDSFLLD 180 LNIRGGYDLS ST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-20 | 19 | 77 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-20 | 19 | 77 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-20 | 19 | 77 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-20 | 19 | 77 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-20 | 19 | 77 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-20 | 19 | 77 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-20 | 19 | 77 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-20 | 19 | 77 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000152G0240 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652754.2 | 2e-63 | PREDICTED: myb family transcription factor APL-like | ||||
TrEMBL | Q7XPT2 | 1e-100 | Q7XPT2_ORYSJ; OSJNBa0083N12.9 protein | ||||
STRING | OGLUM04G23960.1 | 1e-100 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18240.3 | 2e-30 | myb-related protein 1 |