PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000148G1280

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 267aa MW: 29825 Da PI: 5.5034

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000148G1280	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.1	2.8e-43	4	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppG+rF Pt+eelv +yL++k++g++ ++++vi+ +d+++++Pw+Lp+ +++++ + w++F++r++++a+g r++r+t sgyWka g+ PH01000148G1280 4 LPPGYRFYPTEEELVRFYLRHKLDGRRgGDIDRVIPVADVCSLDPWQLPEvhrgACAGDGEPWFYFCRRQEREARGGRPSRTTPSGYWKAAGTP 97 79*********************998778889**********95456544557889**************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++g+ vg+kkt+vfy+grap g+kt+W m+eyr+ PH01000148G1280 98 GWVYSADGRPVGTKKTMVFYRGRAPAGTKTKWKMNEYRA 136 ***********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-49	3	172	IPR003441	NAC domain
PROSITE profile	PS51005	47.864	4	173	IPR003441	NAC domain
Pfam	PF02365	1.1E-23	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MGELPPGYRF YPTEEELVRF YLRHKLDGRR GGDIDRVIPV ADVCSLDPWQ LPEVHRGACA 60 GDGEPWFYFC RRQEREARGG RPSRTTPSGY WKAAGTPGWV YSADGRPVGT KKTMVFYRGR 120 APAGTKTKWK MNEYRALEEE DDDNAAAAHA APSVPNFALQ TRSEFSLCRL YTRSGCPRQF 180 DRRPCAAAAG GGIEDPAPSS AAAALASEDV EVERDRKRRR CAPNYGTSSN DGDGDRSVQQ 240 QQQLTQSGTD DELVDSMTSW EEFLDWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-30	4	173	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-30	4	173	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-30	4	173	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-30	4	173	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	3e-30	4	173	17	165	NAC domain-containing protein 19
4dul_B	3e-30	4	173	17	165	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	219	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000148G1280

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP093626	0.0	FP093626.1 Phyllostachys edulis cDNA clone: bphylf060a06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158910.1	1e-124	LOW QUALITY PROTEIN: NAC domain-containing protein 90-like
Refseq	XP_020158921.1	1e-124	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D9WH20	1e-126	A0A0D9WH20_9ORYZ; Uncharacterized protein
STRING	LPERR05G14390.1	1e-127	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-65	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]