PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000143G0710
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 1102aa    MW: 122366 Da    PI: 7.7902
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000143G0710genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.12.8e-564585851128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v
  PH01000143G0710 458 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKV 550
                      79****************************.99**************95334455777************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s +++ vg+kktLv+y+grap+g++tdWvmheyrl
  PH01000143G0710 551 NS-QRRPVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 585
                      **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577561.13E-797120IPR001878Zinc finger, CCHC-type
SMARTSM003435.8E-5100116IPR001878Zinc finger, CCHC-type
PROSITE profilePS5015811.004101115IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.103.7E-7101126IPR001878Zinc finger, CCHC-type
PfamPF000986.7E-7101116IPR001878Zinc finger, CCHC-type
PfamPF139761.3E-7332380IPR025724GAG-pre-integrase domain
SuperFamilySSF1019412.48E-64451608IPR003441NAC domain
PROSITE profilePS5100561.367458608IPR003441NAC domain
PfamPF023654.0E-29459585IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1102 aa     Download sequence    Send to blast
MGENQGLQQV LEKLAQLLTE KTDCISTVKK WIERRRVIEF LKGLNPRFDG RRATMFHQPT  60
LPTLEEAIAA IAQEKTRLKV MTSTASQITR PVFAVTKTRD CFNCGEMGHL SRNCPHPRRP  120
NRGKDRVYVK SGQKGSGSKG GKSSYKANFA MTGEESPERV EVSVAELEEL RQLKKRVENL  180
GNKDKGTAIV SSASANLAHS NPGKWIIDSG ASTHVTGMLD EFKSYTPFSP TYMETIQTAD  240
GTVQPIKGVG IVQCSPSITL SSVLHVPSFL VNLLSISSLV DHLDCWVIFD RETCLIQERQ  300
NGRQLGTGTR SNGLWYLDPR EGDVGLCTAL VATSSEEEAR VMLMHCRLDH ISFETMSKVF  360
PDVINKVDRS KLMCDTCEFA HLQSAHPSGI IVPTGSSVTQ LLTVGMQPSQ QSVRTVIHSR  420
TPEQTALDSL ACLPSSKHPL AVRVLRGRSR KQMAPVSLPP GFRFHPTDEE LIIYYLKRKI  480
NGRQIELEII PEVDLYKCEP WDLPEKSFLP SKDLEWYFFS PRDRKYPNGS RTNRATKAGY  540
WKATGKDRKV NSQRRPVGMK KTLVYYRGRA PHGSRTDWVM HEYRLDEREC ETDTGLQDAY  600
ALCRVFKKTA PGPKIIEHYG AVHHHLEQPQ WMASSVDRSP TLHVSCDGRG DDFESSSFSF  660
PTEVPMDSMH GGFGMQMGSA PHEDGKWMQF LSEDAFNATN PFFMNPAASN FSCLPSKVDV  720
ALECARLQHR LSLPPLEVED FPQDVSLDTK TGILRSNPNE VDILQEFLSV ASASQELING  780
SSSGYPEMWL GAGTSSASTH YMNELSSLVE LGVKTKEEVD SFYQMGGIGT SGHDEPARLV  840
EITDMEFKEE KKKVENLRGV KLVNNDLGEI VVGGDGSIPT EGITHYPVKD TTDNSGGTDT  900
APIFSQSQPD DFAIGFNDVN PNASFDLYEK VDVKHGLFVS RVGAAKTFFH RTEPSKKVSF  960
HLNPVASDVS EAIEKFHFPI TTKISGRVSI FSKFKALIMD KFLMRPSYKR YLGSKETTAS  1020
ELLQIMSLLL APKEVTGPTE QELVKKKAKE VMKPGPGWGC DGGNNVWLPL SKGRGISSMF  1080
LSGKWTFLTP ALAIRTPGCN H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-554486085168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000143G0710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2658210.0AB265821.1 Oryza sativa Japonica Group RIM1 mRNA for NAC protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649289.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLA0A0E0K8120.0A0A0E0K812_ORYPU; Uncharacterized protein
STRINGOPUNC03G01460.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-127NAC domain containing protein 28