PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000141G1130

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 382aa MW: 41601.6 Da PI: 9.9467

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000141G1130	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.2	1.7e-49	37	162	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrFhPt+ee++ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t sgyWkatg d+ + ++ PH01000141G1130 37 MPGFRFHPTEEEIIEFYLRRKVEGKRFNV-ELITFLDLYRFDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTVSGYWKATGADRMIRAE 129 79*************************.89***********888889************************************* PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkktLvfy+g+apkg++++W+m+eyrl PH01000141G1130 130 NNRSIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 162 *****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.186	36	192	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-52	36	169	IPR003441	NAC domain
Pfam	PF02365	6.6E-24	38	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MSRYENGHGA AVEAAAGGGG NKAWEGGGDA HEDDLVMPGF RFHPTEEEII EFYLRRKVEG 60 KRFNVELITF LDLYRFDPWE LPAMAAIGEK EWFFYVPRDR KYRNGDRPNR VTVSGYWKAT 120 GADRMIRAEN NRSIGLKKTL VFYSGKAPKG VRSSWIMNEY RLPPADTDRW PHGFPMNALR 180 HQRWARSFLL GALDRLPRRR GATGQQTTVI VIHAHAAPNS IQASPPSPGR VHVTGRHHGS 240 RPDTQGGGAT AASRRLQSAA SPAAASDQQE AAAALLYQQY SKNTNAFAST YSLLNLVNAA 300 SMGSSAAAID ELSTLVGHGA QQSYLSPAGS HGHFLPLPTP SSQSTALGTL PMSLAAISDK 360 IWDWNPIPDS AGRDYSSAGF K*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MSRYENGHGA AVEAAAGGGG NKAWEGGGDA HEDDLVMPGF RFHPTEEEII EFYLRRKVEG  60
KRFNVELITF LDLYRFDPWE LPAMAAIGEK EWFFYVPRDR KYRNGDRPNR VTVSGYWKAT  120
GADRMIRAEN NRSIGLKKTL VFYSGKAPKG VRSSWIMNEY RLPPADTDRW PHGFPMNALR  180
HQRWARSFLL GALDRLPRRR GATGQQTTVI VIHAHAAPNS IQASPPSPGR VHVTGRHHGS  240
RPDTQGGGAT AASRRLQSAA SPAAASDQQE AAAALLYQQY SKNTNAFAST YSLLNLVNAA  300
SMGSSAAAID ELSTLVGHGA QQSYLSPAGS HGHFLPLPTP SSQSTALGTL PMSLAAISDK  360
IWDWNPIPDS AGRDYSSAGF K*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-51	38	162	19	142	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-51	38	162	19	142	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-51	38	162	19	142	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-51	38	162	19	142	NO APICAL MERISTEM PROTEIN
3swm_A	4e-51	38	162	22	145	NAC domain-containing protein 19
3swm_B	4e-51	38	162	22	145	NAC domain-containing protein 19
3swm_C	4e-51	38	162	22	145	NAC domain-containing protein 19
3swm_D	4e-51	38	162	22	145	NAC domain-containing protein 19
3swp_A	4e-51	38	162	22	145	NAC domain-containing protein 19
3swp_B	4e-51	38	162	22	145	NAC domain-containing protein 19
3swp_C	4e-51	38	162	22	145	NAC domain-containing protein 19
3swp_D	4e-51	38	162	22	145	NAC domain-containing protein 19
4dul_A	3e-51	38	162	19	142	NAC domain-containing protein 19
4dul_B	3e-51	38	162	19	142	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000141G1130

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094137	0.0	FP094137.1 Phyllostachys edulis cDNA clone: bphylf036g16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179754.1	1e-154	protein BEARSKIN2-like
TrEMBL	A0A3B6ENU7	1e-158	A0A3B6ENU7_WHEAT; Uncharacterized protein
TrEMBL	A0A446NYA7	1e-158	A0A446NYA7_TRITD; Uncharacterized protein
STRING	MLOC_57215.1	1e-155	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	5e-87	NAC domain containing protein 35