PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000140G0830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | C2H2 | ||||||||
Protein Properties | Length: 241aa MW: 25219.7 Da PI: 7.8133 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00037 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H PH01000140G0830 50 YECKTCNKCFPTFQALGGHRASH 72 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.0005 | 143 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H PH01000140G0830 143 HECSICGAEFASGQALGGHMRRH 165 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.0E-12 | 49 | 74 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.47E-9 | 49 | 72 | No hit | No description |
SMART | SM00355 | 0.094 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.076 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.47E-9 | 138 | 165 | No hit | No description |
Pfam | PF13912 | 9.3E-13 | 142 | 166 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 143 | 165 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.699 | 143 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 145 | 165 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAHCLILLAQ GSAVDSKPSP APAPTERYTS RKYTEAATTA DGVRAGFYVY ECKTCNKCFP 60 TFQALGGHRA SHRKPRLAGS DEENANASTV TIAKSKPPMT TASPPPPPPQ VDAAIAPAPV 120 DVTTVLSLNN GAGSISKLNL RVHECSICGA EFASGQALGG HMRRHRPLHP LERAVTAITT 180 DKKKDGSTSI NLELDLNLPA PSDEESVSLP PPVVLGLGQF DDGKKGLMLT ASAALVDCHY 240 * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000140G0830 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003989 | 5e-69 | AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06. | |||
GenBank | AP004026 | 5e-69 | AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04. | |||
GenBank | AP014958 | 5e-69 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 5e-69 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822199.1 | 3e-99 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A0A9HRL3 | 1e-106 | A0A0A9HRL3_ARUDO; Uncharacterized protein | ||||
STRING | Traes_6DL_88DFCF552.1 | 2e-98 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 4e-42 | C2H2 family protein |