PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000138G1130

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GRAS

Protein Properties

Length: 735aa MW: 82830.8 Da PI: 6.9669

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000138G1130	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	392.1	6.2e-120	359	730	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++ L++cA+av+++d + a++lL+++++++ p+gd +qRla +f+ +L+arla+++s+ly++l +++t+ s+ l+a++l+ ++P+ ++s PH01000138G1130 359 LRTILIHCAQAVAADDRRTANELLKQIRQHSKPNGDGTQRLAYCFADGLEARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRLS 449 5789**********************************************************999999...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 h++ Nq+Il ++++++vHiiDf+i G+QWp+L++ L++R++gpp+lRiTg++ p++g +e++eetg+rLa++A+++gvpfe++ +a+++ PH01000138G1130 450 HFLSNQTILSMTKNASKVHIIDFGIYFGFQWPCLIRRLSKREGGPPKLRITGIDVPQPGfrPTERIEETGQRLAEYAKKFGVPFEYQG-IASKW 542 ******************************************************9*************************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e++++e+L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P+++++ + +++ + F +rf eal ++s+lfd+le+++pr++ PH01000138G1130 543 ETIRVEDLKVAKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPTIFIHGIVNGSYSVPFFITRFREALFHFSSLFDMLETTVPRADA 636 ****************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r +aGF + pl+++++++ak ++ ++ + + ++e+sg+l++gWk+r ++++S W+ PH01000138G1130 637 QRTLMERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVMKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRIIYAISTWK 730 *************************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.96	333	710	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-117	359	730	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MGLDNTLGEL SGMFCGLSYD GYTDHSTLSD YFRFTDPQPV ILPQMAGEPN SNLSSNISRA 60 TSTETDNPED WEFISDESLN YISRMLMEED IDEKVSMYQE ESAALCAAAK PFYDILGHKF 120 PPSPDRQLMP WSLDSPSDSS SSSHAWSLAS TVTSSSTGGA VDSNRRRNVG HCEQLGAYRG 180 LCGQPLQPLV GPSSYVCNVA EALEDPLITN GRIPEYLFES LPTWDFRRGV EEAQKFLPGS 240 DKLVIDLEAG DVARPQKAGK DVSLNCSKTE VLKVKKNRQS EDLDLMEGRN IKQSAFCSDE 300 PDWIEMFDDL LRQTEKKATV LREMMRNEAS KNSQVTQTKG ASGARSRGRK PTKKEVVDLR 360 TILIHCAQAV AADDRRTANE LLKQIRQHSK PNGDGTQRLA YCFADGLEAR LAGTGSQLYH 420 KLVAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKNASKVHII DFGIYFGFQW 480 PCLIRRLSKR EGGPPKLRIT GIDVPQPGFR PTERIEETGQ RLAEYAKKFG VPFEYQGIAS 540 KWETIRVEDL KVAKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPTIFIHGIV 600 NGSYSVPFFI TRFREALFHF SSLFDMLETT VPRADAQRTL MERDLFGREA LNVIACEGSD 660 RVERPETYKQ WQVRNLRAGF VQSPLNQDIV MKAKDKVKDI YHKDFVIDED SGWLLQGWKG 720 RIIYAISTWK PNNN*

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MGLDNTLGEL SGMFCGLSYD GYTDHSTLSD YFRFTDPQPV ILPQMAGEPN SNLSSNISRA  60
TSTETDNPED WEFISDESLN YISRMLMEED IDEKVSMYQE ESAALCAAAK PFYDILGHKF  120
PPSPDRQLMP WSLDSPSDSS SSSHAWSLAS TVTSSSTGGA VDSNRRRNVG HCEQLGAYRG  180
LCGQPLQPLV GPSSYVCNVA EALEDPLITN GRIPEYLFES LPTWDFRRGV EEAQKFLPGS  240
DKLVIDLEAG DVARPQKAGK DVSLNCSKTE VLKVKKNRQS EDLDLMEGRN IKQSAFCSDE  300
PDWIEMFDDL LRQTEKKATV LREMMRNEAS KNSQVTQTKG ASGARSRGRK PTKKEVVDLR  360
TILIHCAQAV AADDRRTANE LLKQIRQHSK PNGDGTQRLA YCFADGLEAR LAGTGSQLYH  420
KLVAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKNASKVHII DFGIYFGFQW  480
PCLIRRLSKR EGGPPKLRIT GIDVPQPGFR PTERIEETGQ RLAEYAKKFG VPFEYQGIAS  540
KWETIRVEDL KVAKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPTIFIHGIV  600
NGSYSVPFFI TRFREALFHF SSLFDMLETT VPRADAQRTL MERDLFGREA LNVIACEGSD  660
RVERPETYKQ WQVRNLRAGF VQSPLNQDIV MKAKDKVKDI YHKDFVIDED SGWLLQGWKG  720
RIIYAISTWK PNNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-50	363	730	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000138G1130

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984720.1	0.0	scarecrow-like protein 9
Refseq	XP_004984721.1	0.0	scarecrow-like protein 9
TrEMBL	A0A0E0KHM8	0.0	A0A0E0KHM8_ORYPU; Uncharacterized protein
STRING	Pavir.J32327.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein