PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000135G1070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 389aa    MW: 43734.1 Da    PI: 9.3944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000135G1070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.4e-53531801128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      + pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s
  PH01000135G1070  53 MLPGFRFHPTDEELVRFYLKRKIQQKSLPI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYS 145
                      579***************************.89***************9888999*************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  PH01000135G1070 146 SdGTKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 180
                      956667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5551185IPR003441NAC domain
PROSITE profilePS5100551.60953205IPR003441NAC domain
PfamPF023651.2E-2555180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDTKHCPYMT KVRGKRIGMK GKGMILKGFL DQERMKDMDE IRSDDIEKQD EVMLPGFRFH  60
PTDEELVRFY LKRKIQQKSL PIELIRQLDI YKYDPWDLPK LASTGEKEWY FYCPRDRKYR  120
NSTRPNRVTG AGFWKATGTD RPIYSSDGTK CIGLKKSLVF YKGRAAKGIK TDWMMHEFRL  180
PSLTNPSLPQ KKPLEKTIPP NTTQRSRHSS ENTTSAMTNA VSSTIQFTGS GYLPSKVPSC  240
HNTLNIIDSS SSRPAASIVL PPLLPPPGAE HQAMSILSAI PLDLPSGMDI ASMVLNASPI  300
TLPNMDRSTP TNIEFAQPQQ CNNNNMINKC MVDLPDIGNN VNGAPRSINF PFNLQGTLSD  360
EWRATLPWDS LPCTTEVSAN YQSTKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-505518017140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000135G1070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041141e-115AP004114.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1118_G04.
GenBankAP0149581e-115AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-115CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171862.10.0putative NAC domain-containing protein 94
TrEMBLA0A3B6PQE90.0A0A3B6PQE9_WHEAT; Uncharacterized protein
TrEMBLA0A446WL170.0A0A446WL17_TRITD; Uncharacterized protein
STRINGTraes_6BL_A169A3ECB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137172629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-92NAC domain containing protein 94