PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000135G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family AP2
Protein Properties Length: 307aa    MW: 32997.5 Da    PI: 5.1939
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000135G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.98.9e-12177233155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ++GV++++++g+++A+++d  +   g +rk  + g+++t+e+Aa+a++ a++k++g
  PH01000135G0570 177 SSFHGVTRHRWSGKFEAHLWDsSCRiEGrRRKGKQ-GSYDTEEKAARAYDVAALKYWG 233
                      5799*****************76667776667777.********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-14177243IPR016177DNA-binding domain
CDDcd000185.42E-16177239No hitNo description
PfamPF008477.8E-9178233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-13178241IPR001471AP2/ERF domain
PROSITE profilePS5103217.622178241IPR001471AP2/ERF domain
SMARTSM003802.3E-16178247IPR001471AP2/ERF domain
PRINTSPR003671.0E-5179190IPR001471AP2/ERF domain
SMARTSM003800.011252287IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-5255283IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-7255282IPR001471AP2/ERF domain
PRINTSPR003671.0E-5263283IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEGSLEEEKP AGESGDEGKI ERSHSINLNS LPAVATATRE NGDLHGAVES GAKDLSTGIV  60
EESSGTVQKK LPKNEEVVEG EVQGYADMKN DSVDPLNSEN PVKKNDALVN VAENEGCADG  120
CHGAKRVKVV SVVKKDESAE EDGDSINSVT VVGYREKGAT GAPAGITAVR AAGTRSSSFH  180
GVTRHRWSGK FEAHLWDSSC RIEGRRRKGK QGSYDTEEKA ARAYDVAALK YWGQNTKLNF  240
SASFFFFFCF PVISKTEEEA AEAYDIAAIE IRGKNAVTNF DRSNYMEKGL HCIEGAGLKL  300
LASKPE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203210GRRRKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000135G0570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131696.11e-109uncharacterized protein LOC100193057
TrEMBLM7YAX81e-138M7YAX8_TRIUA; AP2-like ethylene-responsive transcription factor AIL5
STRINGTRIUR3_24654-P11e-139(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.14e-27AP2 family protein