PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000133G1180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 590aa    MW: 66743 Da    PI: 9.362
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000133G1180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17.5e-09501523527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C++fartGtCk+Gd+C++ H++
  PH01000133G1180 501 VCHHFARTGTCKFGDSCRYFHPK 523
                      5********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.201.5E-2565172No hitNo description
CDDcd14137067359No hitNo description
SuperFamilySSF561122.66E-8871381IPR011009Protein kinase-like domain
PfamPF000691.1E-6572356IPR000719Protein kinase domain
SMARTSM002201.3E-8872356IPR000719Protein kinase domain
PROSITE profilePS5001144.04772356IPR000719Protein kinase domain
PROSITE patternPS00107078102IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.101.5E-58173368No hitNo description
PROSITE patternPS001080193205IPR008271Serine/threonine-protein kinase, active site
SMARTSM004516.5E-6438473IPR003604Zinc finger, U1-type
SuperFamilySSF576676.9E-14439488No hitNo description
PfamPF062201.0E-8440471IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.981496524IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4498523IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6499523IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5501521IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6501523IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0046777Biological Processprotein autophosphorylation
GO:0005829Cellular Componentcytosol
GO:0003676Molecular Functionnucleic acid binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MASVGVAPSG YKNSSSTSMD VEKLPDQMSE LKIRDDKEVE ATIINGKGTE TGHIIVTTTG  60
GRNGQPKQTV SYMAERIVGQ GSFGIVFQAK CFETGETVAI KKVLQDKRYK NRELQTMRLL  120
DHPNVVALKH CFFSTTEKDE LYLNLVLEYV PETVHRVVKH YNKMNQRMPL IYVKLYMYQI  180
CRALAYIHVS IGVCHRDIKP QNLLVNPHTH QLKLCDFGSA KVLVKGEPNI SYICSRYYRA  240
PELIFGATEY TTAIDIWSAG CVLAELMLGQ PLFPGESGVD QLVEIIKVLG TPTREEIKCM  300
NPNYTEFKFP QIKAHPWHKV FHKRMPPEAV DLVSRLLQYS PNLRCTAMEA LVHPFFDELR  360
DPNTRLPNGR FLPPLFNFKP HELKGVPADI VAKLIPEHAK KQCSYAGLCA RRVEWRGLKG  420
SGRNSRERGE KREREMPLGK YYCDYCEKQF QDTAAARKRH LQGAQHQRAH ALWYDAVRRQ  480
ESQGGASSLL QPNGALLAQG VCHHFARTGT CKFGDSCRYF HPKPHAVNPA LAPSVWVKGE  540
WIIRMFTRYI TWPGPGTMVQ QSNFLRSQPN FVGYQAVEGN SFSGDLIIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t31_A1e-1752543020407Glycogen synthase kinase-3 beta
5t31_B1e-1752543020407Glycogen synthase kinase-3 beta
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay mediate extracellular signals to regulate transcription in differentiating cells. Probably involved first at the cortical polarity site, to restrict MAPK signaling and promote asymmetric cell division (ACD), and second in the nucleus of stomatal lineage ground cells (SLGCs) or meristemoids, to limit cell division and to promote differentiation into pavement or stomatal guard cells, respectively (PubMed:30429609). Phosphorylate YDA and SPCH in vitro (PubMed:30429609). {ECO:0000269|PubMed:30429609}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000133G1180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988620.0FP098862.1 Phyllostachys edulis cDNA clone: bphylf043a16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340156.10.0glycogen synthase kinase-3 MsK-3
RefseqXP_020397732.10.0glycogen synthase kinase-3 MsK-3 isoform X1
SwissprotP432890.0KSG3_ARATH; Shaggy-related protein kinase gamma
TrEMBLA0A0D9Y6490.0A0A0D9Y649_9ORYZ; Uncharacterized protein
STRINGLPERR01G09130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.13e-26C3H family protein
Publications ? help Back to Top
  1. Dornelas MC,Wittich P,von Recklinghausen I,van Lammeren A,Kreis M
    Characterization of three novel members of the Arabidopsis SHAGGY-related protein kinase (ASK) multigene family.
    Plant Mol. Biol., 1999. 39(1): p. 137-47
    [PMID:10080716]
  2. Dornelas MC,Van Lammeren AA,Kreis M
    Arabidopsis thaliana SHAGGY-related protein kinases (AtSK11 and 12) function in perianth and gynoecium development.
    Plant J., 2000. 21(5): p. 419-29
    [PMID:10758494]
  3. Jonak C,Hirt H
    Glycogen synthase kinase 3/SHAGGY-like kinases in plants: an emerging family with novel functions.
    Trends Plant Sci., 2002. 7(10): p. 457-61
    [PMID:12399181]
  4. Takahashi N, et al.
    Expression and interaction analysis of Arabidopsis Skp1-related genes.
    Plant Cell Physiol., 2004. 45(1): p. 83-91
    [PMID:14749489]
  5. Richard O,Paquet N,Haudecoeur E,Charrier B
    Organization and expression of the GSK3/shaggy kinase gene family in the moss Physcomitrella patens suggest early gene multiplication in land plants and an ancestral response to osmotic stress.
    J. Mol. Evol., 2005. 61(1): p. 99-113
    [PMID:16007489]
  6. Youn JH, et al.
    Structural and functional characterization of Arabidopsis GSK3-like kinase AtSK12.
    Mol. Cells, 2013. 36(6): p. 564-70
    [PMID:24292946]
  7. Zhu JY, et al.
    The F-box Protein KIB1 Mediates Brassinosteroid-Induced Inactivation and Degradation of GSK3-like Kinases in Arabidopsis.
    Mol. Cell, 2017. 66(5): p. 648-657.e4
    [PMID:28575660]
  8. Mittal S, et al.
    Comparative Analysis of CDPK Family in Maize, Arabidopsis, Rice, and Sorghum Revealed Potential Targets for Drought Tolerance Improvement.
    Front Chem, 2017. 5: p. 115
    [PMID:29312925]
  9. Houbaert A, et al.
    POLAR-guided signalling complex assembly and localization drive asymmetric cell division.
    Nature, 2018. 563(7732): p. 574-578
    [PMID:30429609]
  10. Bianchi MW,Guivarc'h D,Thomas M,Woodgett JR,Kreis M
    Arabidopsis homologs of the shaggy and GSK-3 protein kinases: molecular cloning and functional expression in Escherichia coli.
    Mol. Gen. Genet., 1994. 242(3): p. 337-45
    [PMID:7509023]
  11. Dornelas MC,Lejeune B,Dron M,Kreis M
    The Arabidopsis SHAGGY-related protein kinase (ASK) gene family: structure, organization and evolution.
    Gene, 1998. 212(2): p. 249-57
    [PMID:9611268]