PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000132G1020

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 371aa MW: 40116.4 Da PI: 10.0171

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000132G1020	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	71.4	1.4e-22	91	135	2	46
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+h+ PH01000132G1020 91 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHM 135 9*****************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-19	88	135	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.68E-8	88	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-14	91	134	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MAGSSGGSEM YHEMGLLAEP KLCLGFDTAT ALRDGVYNGQ CNLQQQQPRR LHQPSQIQRF 60 KKSSSGSPVF SGGAARSGNG GGGGKRSSRA PRMRWTTALH AHFVHAVELL GGHERATPKS 120 VLELMNVKDL TLAHMYRTVK GTATDRSCAA GHGQMREMGF LRRGAGEVDG FDVFNNNTCN 180 ATANISFFGM RGAIEWDRLL MKAACRVAGG AGECLVPAAG GLPLPRPLPC PYLMSTHHYL 240 IKQNQGWRGG VQQQDDVHCL GQDKGQRLPA GHDETVRIRS SSAGFAKGWS TASSLWPSTP 300 QMNGRISSSA AEQACMKQQQ VPSSRIPNLE ISLGRQGWQN SIMDQQQQQL QRQRSVESSA 360 SKELTLLKCL *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MAGSSGGSEM YHEMGLLAEP KLCLGFDTAT ALRDGVYNGQ CNLQQQQPRR LHQPSQIQRF  60
KKSSSGSPVF SGGAARSGNG GGGGKRSSRA PRMRWTTALH AHFVHAVELL GGHERATPKS  120
VLELMNVKDL TLAHMYRTVK GTATDRSCAA GHGQMREMGF LRRGAGEVDG FDVFNNNTCN  180
ATANISFFGM RGAIEWDRLL MKAACRVAGG AGECLVPAAG GLPLPRPLPC PYLMSTHHYL  240
IKQNQGWRGG VQQQDDVHCL GQDKGQRLPA GHDETVRIRS SSAGFAKGWS TASSLWPSTP  300
QMNGRISSSA AEQACMKQQQ VPSSRIPNLE ISLGRQGWQN SIMDQQQQQL QRQRSVESSA  360
SKELTLLKCL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000132G1020

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012611	1e-48	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189915.1	1e-130	probable transcription factor RL9
TrEMBL	A0A0A9GJU4	1e-136	A0A0A9GJU4_ARUDO; Uncharacterized protein
STRING	EMT25059	1e-132	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3742	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	3e-27	G2-like family protein