PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000129G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 288aa    MW: 31136.9 Da    PI: 6.0342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000129G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20113162255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+g
  PH01000129G0360 113 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRG 162
                      59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.78E-34112172No hitNo description
SuperFamilySSF541717.19E-23113170IPR016177DNA-binding domain
PROSITE profilePS5103223.604113170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-33113171IPR001471AP2/ERF domain
SMARTSM003804.3E-39113176IPR001471AP2/ERF domain
PfamPF008471.3E-14114162IPR001471AP2/ERF domain
PRINTSPR003672.4E-11114125IPR001471AP2/ERF domain
PRINTSPR003672.4E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MATTIDWHGC NTNIPAALYG MVDRKEVRQA LAPPMVQDAR TISFSYPCSG VEQSAGLLLG  60
ANYQLTPAQI LQVQSQIHHL RRPGEALAAV AQPMKRHGFT AAAALPARPA AKLYRGVRQR  120
HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA LAYDSAAFRL RGDSARLNFP ELSRGGEHLG  180
PPLHAAVDAK LHAICHGMDL PQQSQSTTTA AAPSSFSSES PDVKSEPGCS GSESSSSADG  240
DVSSTDSSDV VPEMQLLDFS EAPWDESESF LLRKYPSLEI DWDAILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21111177370ATERF1
3gcc_A6e-21111177370ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000129G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2191851e-177AC219185.1 Oryza officinalis clone OO__Ba0118D01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795666.11e-140ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E41e-62RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2S3ITE41e-139A0A2S3ITE4_9POAL; Uncharacterized protein
STRINGGRMZM2G113060_P011e-139(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-45related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]