PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000122G1000
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 527aa    MW: 58151.3 Da    PI: 8.0652
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000122G1000genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1225.4e-3824935223128
              NAM  23 vegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116
                      + g++l++  +i+evd+yk++PwdLp+++  + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v   +g++ g+kk Lvfy g+ap+g
  PH01000122G1000 249 AVGQRLPV-PIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP-RGRTLGVKKALVFYAGKAPRG 340
                      55666777.67***************8777899*************************************99.999****************** PP

              NAM 117 ektdWvmheyrl 128
                      +ktdW+mheyrl
  PH01000122G1000 341 VKTDWIMHEYRL 352
                      **********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF514452.05E-5118172IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.7E-10121171IPR013781Glycoside hydrolase, catalytic domain
PROSITE profilePS5100546.045226380IPR003441NAC domain
SuperFamilySSF1019411.1E-48247380IPR003441NAC domain
PfamPF023659.9E-15269352IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MKDNVAHLHL PLLLVALLLC CHLPPVEALL PCLHLRPPLG HPTSPPPARA WLQILPPPRL  60
LLARDPQVHH RPTRRLPLHP SPAATSSSSC APRGLLLLID ALKGAERLSL PLPSPHFPCC  120
VSRMFRAGAA MGLTVCRTWS FNDDGYNALQ FAPGRFDERV FKALDRVVAE ALMNEFGLSH  180
MVEGFDHSHR NVFYKTVYDI VHESPRRGGA GAGAFVWIDS RIDSTDTVSA TIAGSAVNMV  240
THTPRTRRAV GQRLPVPIIA EVDLYKFDPW DLPERALFGA REWYFFTPRD RKYPNGSRPN  300
RAAGNGYWKA TGADKPVAPR GRTLGVKKAL VFYAGKAPRG VKTDWIMHEY RLADAGRAAA  360
GAKKGSLRLD DWVLCRLYNK KNEWEKMQLG KEAEEEASDM ITSHSHSHSQ SHSHSWAETR  420
TPESEIVDND PFPELDSFPA FQDQAAQMNM MVPKKEQDMV EGAQNARNDL FVDLSYDDIQ  480
SMYSGLDMLP PGDDFYSSLF ASPRVKTNQP GAGAGAGAGD GGMAPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-8424738635174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000122G1000
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0963170.0FP096317.1 Phyllostachys edulis cDNA clone: bphyem105m10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466217.11e-151NAC domain-containing protein 67
SwissprotQ75HE51e-144NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBLA0A0E0KKM81e-150A0A0E0KKM8_ORYPU; Uncharacterized protein
STRINGOPUNC03G35740.11e-151(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.11e-60NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]