PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000117G1210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17036.1 Da    PI: 6.7253
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000117G1210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.8e-273382251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqv fskRr g++KKA+ELSvLC+aeva+++fs+ g+lye++s
  PH01000117G1210 33 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCEAEVALVVFSPAGRLYEFAS 82
                     8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-342483IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.2542484IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-262646IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-2727101IPR002100Transcription factor, MADS-box
CDDcd002651.08E-322894No hitNo description
PfamPF003193.2E-263380IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-264661IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-266182IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEGEEVGRRV QQAAAGEEGE GAMMKQVKVE LRRIEDRTSR QVRFSKRRSG LFKKAYELSV  60
LCEAEVALVV FSPAGRLYEF ASSNSSIEKN FGRYWDIPNT TNDLNIEARD SRVDCNIQAK  120
QAELGLGLWS NGTRLRSKSL DYATEDAYVM S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-172484161Myocyte-specific enhancer factor 2B
1tqe_Q1e-172484161Myocyte-specific enhancer factor 2B
1tqe_R1e-172484161Myocyte-specific enhancer factor 2B
1tqe_S1e-172484161Myocyte-specific enhancer factor 2B
6c9l_A1e-172484161Myocyte-specific enhancer factor 2B
6c9l_B1e-172484161Myocyte-specific enhancer factor 2B
6c9l_C1e-172484161Myocyte-specific enhancer factor 2B
6c9l_D1e-172484161Myocyte-specific enhancer factor 2B
6c9l_E1e-172484161Myocyte-specific enhancer factor 2B
6c9l_F1e-172484161Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000117G1210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820080.13e-53MADS-box transcription factor 51-like isoform X1
RefseqXP_025820081.13e-53MADS-box transcription factor 51-like isoform X1
SwissprotQ9XJ612e-28MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A3Q8C2Q72e-55A0A3Q8C2Q7_9POAL; MADS37-2
STRINGSb07g026180.11e-51(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.14e-27AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]