PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000116G0910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ARF | ||||||||
Protein Properties | Length: 818aa MW: 90111.9 Da PI: 7.7374 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.2 | 7.6e-24 | 141 | 241 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++ +++a+e+ + ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F + PH01000116G0910 141 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--HPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 230 99*****************************544..455569************************************************..44 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++el+v+v++ PH01000116G0910 231 ENGELRVGVRS 241 9999*****97 PP | |||||||
2 | Auxin_resp | 109.6 | 3.2e-36 | 267 | 349 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F+v+Y+Pr+s++eFvv+++ + ++lk++ s+GmRfkm+fe+e+++e+r+ Gt+vg+ d+dp+ W +SkWrsLk PH01000116G0910 267 AWHAVNTGTMFTVYYKPRTSPAEFVVPRDWFDESLKRNHSIGMRFKMRFEGEEAAEQRFNGTIVGIGDSDPSGWVDSKWRSLK 349 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-42 | 134 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.63E-41 | 136 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.03E-21 | 139 | 241 | No hit | No description |
SMART | SM01019 | 2.1E-23 | 141 | 243 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.801 | 141 | 243 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.8E-22 | 141 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.5E-33 | 267 | 349 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 22.773 | 708 | 791 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.47E-11 | 711 | 783 | No hit | No description |
Pfam | PF02309 | 2.2E-7 | 749 | 792 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 818 aa Download sequence Send to blast |
MAAAAAAAAA GLAGGGEGAG VGGGVDGLFV ELWKACAGPL AAVPAVGERV FYLPQGHIEQ 60 VEASTNQVAE QHGTPLYNLP WKIPCKVMNV ELKAEQDTDE VYAQLTLLPE KKRDENASTE 120 EEEVVPDALP AVAERTRVHS FCKTLTASDT STHGGFSVLR RHADECLPPL DMSQHPPTQE 180 LVAKDLHGTE WRFRHIFRGQ PRRHLLQSGW SVFVSAKRLV AGDAFIFLRG ENGELRVGVR 240 SAMRQQANIP SSVISSHSMH LGVLATAWHA VNTGTMFTVY YKPRTSPAEF VVPRDWFDES 300 LKRNHSIGMR FKMRFEGEEA AEQRFNGTIV GIGDSDPSGW VDSKWRSLKV RWDEASSIPR 360 PERVSPWQIE PAVSPPVNPL PAPRIKRPRP NVIASSPDLS AVHKEVASKV VANSQQNVLP 420 RTFHSQESTT LKSSFGNNND LKTSQKLTMW SSGIDQEKNS TAAQRKLSSE GWMQMRRAQG 480 YTEMLSAFQP LKDTQNPLCS FPNQITGNRS NTWNTINVHY PDQQINNNIF PGTWSFMPPN 540 TGFGMNQQNY LMTPNIALPQ RAEKTKFCGN GAFTSLRAHG IDQRSGWFGH IEPSCHIDDA 600 SSSLIKPQPL VIGHDIQKTK GSSCMLFGIP LDSPAKSEPL ISPSSVAYDG KPQTPRSAKG 660 PELDKSSNPS KVAKPLDGTQ PDSVTEKHQS CPEATRNIQS KLQNGSTRSC KKVHKQGIAL 720 GRSVDLMKFT CYDELIVELD QMFDFNGELN GCKNWMVVYT DNEGDMMLVG DDPWNEFCSI 780 VHKIFIYTRE EVQKMNPGAL ISSLFVLPSK TKAACPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-167 | 12 | 371 | 1 | 354 | Auxin response factor 1 |
4ldw_A | 1e-167 | 12 | 371 | 1 | 354 | Auxin response factor 1 |
4ldw_B | 1e-167 | 12 | 371 | 1 | 354 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 385 | 389 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000116G0910 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620411.1 | 0.0 | auxin response factor 24 isoform X1 | ||||
Refseq | XP_015620412.1 | 0.0 | auxin response factor 24 isoform X1 | ||||
Swissprot | Q2QQX6 | 0.0 | ARFX_ORYSJ; Auxin response factor 24 | ||||
TrEMBL | I1R6D5 | 0.0 | I1R6D5_ORYGL; Auxin response factor | ||||
STRING | ORGLA12G0109100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
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