PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000116G0910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 818aa    MW: 90111.9 Da    PI: 7.7374
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000116G0910genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24141241198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++ +++a+e+       +  ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv+a++L +gD ++F   + 
  PH01000116G0910 141 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQ--HPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLVAGDAFIFL--RG 230
                      99*****************************544..455569************************************************..44 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++el+v+v++
  PH01000116G0910 231 ENGELRVGVRS 241
                      9999*****97 PP

2Auxin_resp109.63.2e-36267349183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t+++F+v+Y+Pr+s++eFvv+++ + ++lk++ s+GmRfkm+fe+e+++e+r+ Gt+vg+ d+dp+ W +SkWrsLk
  PH01000116G0910 267 AWHAVNTGTMFTVYYKPRTSPAEFVVPRDWFDESLKRNHSIGMRFKMRFEGEEAAEQRFNGTIVGIGDSDPSGWVDSKWRSLK 349
                      89*******************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-42134256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-41136270IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-21139241No hitNo description
SMARTSM010192.1E-23141243IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801141243IPR003340B3 DNA binding domain
PfamPF023629.8E-22141242IPR003340B3 DNA binding domain
PfamPF065074.5E-33267349IPR010525Auxin response factor
PROSITE profilePS5174522.773708791IPR000270PB1 domain
SuperFamilySSF542773.47E-11711783No hitNo description
PfamPF023092.2E-7749792IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MAAAAAAAAA GLAGGGEGAG VGGGVDGLFV ELWKACAGPL AAVPAVGERV FYLPQGHIEQ  60
VEASTNQVAE QHGTPLYNLP WKIPCKVMNV ELKAEQDTDE VYAQLTLLPE KKRDENASTE  120
EEEVVPDALP AVAERTRVHS FCKTLTASDT STHGGFSVLR RHADECLPPL DMSQHPPTQE  180
LVAKDLHGTE WRFRHIFRGQ PRRHLLQSGW SVFVSAKRLV AGDAFIFLRG ENGELRVGVR  240
SAMRQQANIP SSVISSHSMH LGVLATAWHA VNTGTMFTVY YKPRTSPAEF VVPRDWFDES  300
LKRNHSIGMR FKMRFEGEEA AEQRFNGTIV GIGDSDPSGW VDSKWRSLKV RWDEASSIPR  360
PERVSPWQIE PAVSPPVNPL PAPRIKRPRP NVIASSPDLS AVHKEVASKV VANSQQNVLP  420
RTFHSQESTT LKSSFGNNND LKTSQKLTMW SSGIDQEKNS TAAQRKLSSE GWMQMRRAQG  480
YTEMLSAFQP LKDTQNPLCS FPNQITGNRS NTWNTINVHY PDQQINNNIF PGTWSFMPPN  540
TGFGMNQQNY LMTPNIALPQ RAEKTKFCGN GAFTSLRAHG IDQRSGWFGH IEPSCHIDDA  600
SSSLIKPQPL VIGHDIQKTK GSSCMLFGIP LDSPAKSEPL ISPSSVAYDG KPQTPRSAKG  660
PELDKSSNPS KVAKPLDGTQ PDSVTEKHQS CPEATRNIQS KLQNGSTRSC KKVHKQGIAL  720
GRSVDLMKFT CYDELIVELD QMFDFNGELN GCKNWMVVYT DNEGDMMLVG DDPWNEFCSI  780
VHKIFIYTRE EVQKMNPGAL ISSLFVLPSK TKAACPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-167123711354Auxin response factor 1
4ldw_A1e-167123711354Auxin response factor 1
4ldw_B1e-167123711354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385389KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000116G0910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620411.10.0auxin response factor 24 isoform X1
RefseqXP_015620412.10.0auxin response factor 24 isoform X1
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLI1R6D50.0I1R6D5_ORYGL; Auxin response factor
STRINGORGLA12G0109100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]