PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000115G0490
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 343aa    MW: 36461.8 Da    PI: 4.3049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000115G0490genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-18103153155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIrdp+    +  r++lg+f tae Aa a++ a++ ++g
  PH01000115G0490 103 TQFRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPTAEAAALAYDDAARGIRG 153
                      579*******.**********75....44**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.68E-18103163No hitNo description
SuperFamilySSF541711.31E-21104162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-31104163IPR001471AP2/ERF domain
PROSITE profilePS5103223.815104161IPR001471AP2/ERF domain
PfamPF008472.3E-11104153IPR001471AP2/ERF domain
SMARTSM003804.6E-36104167IPR001471AP2/ERF domain
PRINTSPR003673.0E-10105116IPR001471AP2/ERF domain
PRINTSPR003673.0E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MCGGAILAEL IPSTPARRVT AGHLWPGQGK GKAKQHKGPE ADDFEAAFQE FDEDSEEEGV  60
DEMAMEEEVA ESKPFVFRAS SEKPSGGRAA RQPPAPSRRR KPTQFRGVRR RPWGKWAAEI  120
RDPVKGVRVW LGTFPTAEAA ALAYDDAARG IRGSRAKLNF PSSAATDTRK RGRAGAHAAP  180
AAMATPVIDL IDEEEEEDAT VQAASIKHEA EASESSESGP LPDFSWQGMS APDEAGAHPV  240
VEVVSDQPVD LGGAKKRPRT EPEDANEASP GASDSGDDAD ALFDAFLFAD QFAYFNGGAY  300
ESLDSLFSAN AVQSNAAADA DEGTGTGLWS FDDDCLVEGS LSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21101161263ATERF1
3gcc_A4e-21101161263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198110RRKPTQFRGVRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000115G0490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0918980.0FP091898.1 Phyllostachys edulis cDNA clone: bphyem115l08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.11e-116ethylene-responsive transcription factor ERF073-like
TrEMBLA0A3L6SDZ01e-117A0A3L6SDZ0_PANMI; Uncharacterized protein
STRINGPavir.Ia04158.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.34e-23ERF family protein