PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000115G0470
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 293aa    MW: 31407.6 Da    PI: 4.2616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000115G0470genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-1859109155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIrd +     +  r++lg+f +ae Aa a++aa++ l+g
  PH01000115G0470  59 TRFRGVRRRP-WGKWAAEIRDhV-----KgVRVWLGTFPSAEAAAIAYDAAARDLRG 109
                      589*******.**********66.....45************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.61E-1859119No hitNo description
PfamPF008479.9E-1259109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2960119IPR001471AP2/ERF domain
PROSITE profilePS5103223.20960117IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2160118IPR016177DNA-binding domain
SMARTSM003802.8E-3460123IPR001471AP2/ERF domain
PRINTSPR003672.1E-126172IPR001471AP2/ERF domain
PRINTSPR003672.1E-1299119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MCGGAILAEL MPTTPGHLWP AGKAAKRRQR GGPAADDFEA AFERFDQDSE EEDDEAKTTR  60
FRGVRRRPWG KWAAEIRDHV KGVRVWLGTF PSAEAAAIAY DAAARDLRGA EARLNFPSSS  120
PATACAGKHG VAAAAKATPY VVNLVDEQDG HGAHAPSVMN EAEASESSES SSALPDFSWQ  180
GMSASDEVMA QPAHLQVEPD QFVDLVSAKK RLRIEPQEAT EVLPAASEGS ADLLLDDPFV  240
FGNQFSFFND GAYQSLDSLF CGDAVQSNGA IDESLGLWSF DDDCLVQDSM CY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1856117163ATERF1
3gcc_A2e-1856117163ATERF1
5wx9_A4e-18561171072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000115G0470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297401e-54AC229740.1 Oryza minuta clone OM__Ba0228D20, complete sequence.
GenBankAC2297611e-54AC229761.1 Oryza minuta clone OM__Ba0159K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.12e-80ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2T7CGR11e-79A0A2T7CGR1_9POAL; Uncharacterized protein
STRINGPavir.Ia04158.1.p1e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.17e-21ERF family protein