PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000115G0420
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 333aa    MW: 36112 Da    PI: 5.513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000115G0420genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19105154255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G+r+++ +g+W+AeIrdp     + +r++lg+f t+eeAa+a++  +++l+g
  PH01000115G0420 105 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTPEEAARAYDVEARRLRG 154
                      69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.6E-32104163IPR001471AP2/ERF domain
CDDcd000181.71E-29105162No hitNo description
PROSITE profilePS5103223.446105162IPR001471AP2/ERF domain
SMARTSM003803.0E-36105168IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-22105163IPR016177DNA-binding domain
PfamPF008473.0E-12105154IPR001471AP2/ERF domain
PRINTSPR003674.4E-11106117IPR001471AP2/ERF domain
PRINTSPR003674.4E-11128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MCGGAILTKL IPSPARAASK RVTAGHVWPA SSKKGGKNNK RHHRGVAEAD DFEAAFEEFD  60
DDFDEAEEEE EEDHFVFASK SAFSPAYDDG RAARAASKKK RGRRHFRGIR QRPWGKWAAE  120
IRDPHKGTRV WLGTFNTPEE AARAYDVEAR RLRGSKAKVN FPTAARARPR RANPRTAPKP  180
QCPAQTAYSA AAQPALRGGQ KQEALVVESQ MMGSLFDMDS FLDLTAAAAA LLPVMESSFT  240
DSAESESGSP AKKLRADDSS EGSGGGATLG FADELEFDPF MLFQPPYSNG YESIESLFAG  300
EAGQDVSSVM NNDMNSVSLW SFDEFPVDGA AF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21104162463ATERF1
3gcc_A5e-21104162463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000115G0420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313148.11e-122ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9VK361e-128A0A0A9VK36_ARUDO; Uncharacterized protein
STRINGPavir.Ib00526.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-23ERF family protein