PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000114G0660
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 304aa    MW: 32218.8 Da    PI: 6.3716
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000114G0660genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.14.5e-17168202133
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                      C++Cg++   Tp++Rrgpdg++tLCnaCGl+++ k
  PH01000114G0660 168 CHHCGASAtqTPMMRRGPDGPRTLCNACGLMWANK 202
                      *****87777**********************976 PP
2GATA54.51.5e-17212249136
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                      C++Cg++   Tp++Rrgpdg++tLCnaCGl+++ kg++
  PH01000114G0660 212 CHHCGASAtqTPMMRRGPDGPRTLCNACGLMWANKGMM 249
                      *****87777*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513209.8456196IPR010399Tify domain
PfamPF062006.6E-66586IPR010399Tify domain
PfamPF062034.0E-1693135IPR010402CCT domain
PROSITE profilePS5101713.20593135IPR010402CCT domain
PROSITE profilePS501148.537162197IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-6162205IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-9166204No hitNo description
Gene3DG3DSA:3.30.50.102.9E-14167202IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.04E-11167202No hitNo description
PfamPF003205.0E-15168202IPR000679Zinc finger, GATA-type
PROSITE patternPS003440168195IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.302206254IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-11206259IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-13209262No hitNo description
Gene3DG3DSA:3.30.50.103.6E-16211253IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.50E-14211254No hitNo description
PfamPF003205.6E-15212247IPR000679Zinc finger, GATA-type
PROSITE patternPS003440212239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEQYESQQEH EEDEEEAEED HEGGAGEVVP MDADVATAAA ADAHGAMVPA AAAAAEAGGV  60
PHIGSNTLTL SFQGEVYVFE SVSAEKRLNF PHRVASLMRF REKRKERNFD KKIRYTVRKE  120
VALRMHRNKG QFTSSKSKAE EATSTVTSSD GSPNWGAVEG RPSSASECHH CGASATQTPM  180
MRRGPDGPRT LCNACGLMWA NKILVLEATS RCHHCGASAT QTPMMRRGPD GPRTLCNACG  240
LMWANKGMMR DLSKAPTAPL QVVPSATKDG QNGIAEAPGG EQQNHPAAAA AEAPAPAANG  300
HDS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000114G0660
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646885.11e-110PREDICTED: GATA transcription factor 17-like isoform X1
SwissprotQ6Z4331e-105GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A0E0JVI61e-110A0A0E0JVI6_ORYPU; Uncharacterized protein
STRINGOPUNC02G02970.11e-111(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-54ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]