PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000113G0550
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 325aa    MW: 35537.9 Da    PI: 6.3752
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000113G0550genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.9e-18110163356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  PH01000113G0550 110 KKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 163
                      4568999**********************************************9 PP
2HD-ZIP_I/II127.65.3e-41109199191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      ekkrrl+ eqv++LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++d +k+en++L +++++L++e+
  PH01000113G0550 109 EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQLDDVKAENDALLSHNKKLQTEI 199
                      69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-1992166IPR009057Homeodomain-like
SuperFamilySSF466898.98E-2098167IPR009057Homeodomain-like
PROSITE profilePS5007117.41105165IPR001356Homeobox domain
SMARTSM003891.2E-17108169IPR001356Homeobox domain
PfamPF000461.8E-15110163IPR001356Homeobox domain
CDDcd000861.13E-17110166No hitNo description
PRINTSPR000311.1E-5136145IPR000047Helix-turn-helix motif
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5145161IPR000047Helix-turn-helix motif
PfamPF021838.5E-13165205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSTTSLLLLL FPLTTTPATT PSSPPPNAPP SKTSEVVGTS TIRWLAGHPC TDHAPRTELI  60
HSLAYVRVGM APMLGKRPMY GGGDEVNGCG GGNDPNDDEL SDDGSQAGEK KRRLNVEQVR  120
TLEKNFELGN KLEPERKMQL ARALGLQPRQ VAIWFQNRRA RWKTKQLEKD YDVLKRQLDD  180
VKAENDALLS HNKKLQTEIL ALKGREAASE LINLNKETEA SCSNHSENSS EINLDISRTP  240
PSESPMDPPP PHQQGGGMIP FYPTIARPAS GIDIDHLLHS SSAPKMEHSG GNVQASDTAS  300
FGSLLCGVDE PPPFWPWADH QHFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157165RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000113G0550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3590411e-175AK359041.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1087P18.
GenBankAK3597471e-175AK359747.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1102E15.
GenBankAK3662451e-175AK366245.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985543.11e-141homeobox-leucine zipper protein HOX21 isoform X2
SwissprotQ8S7W91e-133HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLA0A3L6SDB51e-151A0A3L6SDB5_PANMI; Uncharacterized protein
STRINGPavir.Ia04323.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.14e-77HD-ZIP family protein