PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000112G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 266aa    MW: 29883.8 Da    PI: 6.1683
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000112G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.32.6e-182269149
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                     lppGfrFhPtdeelvv+yL+++v++++l++  +i+evd+yk++PwdLp 
  PH01000112G0050 22 LPPGFRFHPTDEELVVHYLCRRVARQPLPV-PIIAEVDLYKFDPWDLPG 69
                     79****************************.88**************93 PP
2NAM44.26.1e-147011287128
              NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      g dk+v  k +g++vg+kk Lvfy+g+ap+g+ktdW+mheyrl
  PH01000112G0050  70 GADKPVAPKgSGRTVGIKKALVFYSGKAPRGVKTDWIMHEYRL 112
                      77889988877899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.3891138IPR003441NAC domain
SuperFamilySSF1019413.27E-4118138IPR003441NAC domain
PfamPF023652.4E-1623112IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAVVAAEAAR SGRRDAEAEL NLPPGFRFHP TDEELVVHYL CRRVARQPLP VPIIAEVDLY  60
KFDPWDLPGG ADKPVAPKGS GRTVGIKKAL VFYSGKAPRG VKTDWIMHEY RLAEADRAPG  120
KKGSQKLDEW VLCRLYNKKN NWEKVKVVQD MAVAAPHHKQ QNREVMDALD DTMSDSFQTH  180
DSEIDNVSGQ QHNSRDMAQG QAMNGIVTVK EDNDWFMDIN LDELQASYMN LGQMVYPAAP  240
GQDSSYWQSI SSPQMKMWQT ILPPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-61141447174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000112G0050
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8037211e-100KT803721.1 Agrostis stolonifera NAC domain-containing protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564478.11e-138NAC domain-containing protein 68
SwissprotQ52QH41e-133NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A220T1T21e-142A0A220T1T2_9POAL; Stress responsive NAC transcription factor
STRINGBRADI2G53260.11e-137(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.12e-51NAC domain containing protein 102
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]