PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000111G0400
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 451aa    MW: 49667.6 Da    PI: 4.3605
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000111G0400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.3e-5061331128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd elv++yLk+k+ gkkl + e+i+ v++yk+ PwdLp k ++++++ ewyfF++rdkky++g+r+nrat +gyWk++gkd+++
  PH01000111G0400   6 LPPGFRFHPTDVELVSYYLKRKIMGKKLFV-EAIPVVELYKYPPWDLPdKsCLRNRDLEWYFFCPRDKKYPKGSRTNRATPNGYWKTSGKDRTI 98 
                      79*************************999.89**************96347777788************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +++ vg+kktL+f+kg+apkg +tdWvm ey++
  PH01000111G0400  99 VL-NSRIVGMKKTLIFHKGKAPKGDRTDWVMYEYKM 133
                      **.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-603156IPR003441NAC domain
PROSITE profilePS5100557.0466156IPR003441NAC domain
PfamPF023651.4E-267132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAQTSLPPGF RFHPTDVELV SYYLKRKIMG KKLFVEAIPV VELYKYPPWD LPDKSCLRNR  60
DLEWYFFCPR DKKYPKGSRT NRATPNGYWK TSGKDRTIVL NSRIVGMKKT LIFHKGKAPK  120
GDRTDWVMYE YKMEDNELEV AGFSKDAYVL CKIFKKSGLG PKIGEQYGAP FNEEEWDDVN  180
AETAMFPFMS YPSSELADAV VESPVQHTVA GGGVDKPPVL TVSAAGLPFE YNSTCATTVD  240
ELQSYHTLEC RGSEVVSANS ASDSLNACNP PESGGIVSDE WTGFLNDSPY CDGANEQLTE  300
LPAMPEAEAR ALELNSDYLY NELASLVESE GVPTVRDQCP GNVTTEYFNP PMISELGTGG  360
HYLELNDLPL GQITLSEMLV PDNLFPQYCS NQIPYNQLNY LDYDNDGAVA ASLAAGNLLP  420
SIPSSIHDMS VDGITSTTNL TGNNGSNPFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-49215711169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000111G0400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814465.10.0NAC domain-containing protein 68-like
RefseqXP_025814466.10.0NAC domain-containing protein 68-like
RefseqXP_025814467.10.0NAC domain-containing protein 68-like
RefseqXP_025814468.10.0NAC domain-containing protein 68-like
TrEMBLA0A2T7DDM00.0A0A2T7DDM0_9POAL; Uncharacterized protein
STRINGSi001352m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-83NAC domain containing protein 103