PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000110G0680
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 316aa    MW: 34476.2 Da    PI: 9.1606
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000110G0680genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1591.9e-49131421129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhP+d+el+++yL +kv+g   ++  +  + ++d++kvePwdLp+ ++ + +ewyfFs rd+kyatg+r+nrat sgyWkatgkd+ v
  PH01000110G0680  13 LPPGFRFHPRDDELICDYLVPKVSGMVgFSGRRPpMVDIDLNKVEPWDLPAVASVGGNEWYFFSLRDRKYATGQRTNRATVSGYWKATGKDRVV 106
                      79***********************9976665656***************8888899***********************************99 PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +  g+lvg++ktLvfy grapkg+kt+Wvm+eyrle
  PH01000110G0680 107 AR-LGALVGMRKTLVFYFGRAPKGRKTEWVMNEYRLE 142
                      99.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-572165IPR003441NAC domain
PROSITE profilePS5100554.79513165IPR003441NAC domain
PfamPF023655.1E-2614141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSMSFLSMVE ADLPPGFRFH PRDDELICDY LVPKVSGMVG FSGRRPPMVD IDLNKVEPWD  60
LPAVASVGGN EWYFFSLRDR KYATGQRTNR ATVSGYWKAT GKDRVVARLG ALVGMRKTLV  120
FYFGRAPKGR KTEWVMNEYR LEGAHEQASE LTSKEDWVMC RVIRKKKSGG GGGGGVTSRP  180
RNLSTIGHDT STATSSPPLP PLTLMDTTLA QLQATMNTTN TSAAATALQQ VPCFSSFSNN  240
IASTNNSATV AHPCYLPMVT GNNGMNYPGH GLPDFGSHWD AALNCDKELR AVLSQLSTSL  300
PPQMAAPVSS TWMNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-49816812168NO APICAL MERISTEM PROTEIN
1ut4_B6e-49816812168NO APICAL MERISTEM PROTEIN
1ut7_A6e-49816812168NO APICAL MERISTEM PROTEIN
1ut7_B6e-49816812168NO APICAL MERISTEM PROTEIN
3swm_A7e-49816915172NAC domain-containing protein 19
3swm_B7e-49816915172NAC domain-containing protein 19
3swm_C7e-49816915172NAC domain-containing protein 19
3swm_D7e-49816915172NAC domain-containing protein 19
3swp_A7e-49816915172NAC domain-containing protein 19
3swp_B7e-49816915172NAC domain-containing protein 19
3swp_C7e-49816915172NAC domain-containing protein 19
3swp_D7e-49816915172NAC domain-containing protein 19
4dul_A6e-49816812168NAC domain-containing protein 19
4dul_B6e-49816812168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000110G0680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0936670.0FP093667.1 Phyllostachys edulis cDNA clone: bphyem125e18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577546.11e-165NAC domain-containing protein 21/22 isoform X2
TrEMBLA0A0Q3GYD21e-164A0A0Q3GYD2_BRADI; Uncharacterized protein
STRINGBRADI4G02060.11e-163(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100223144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.22e-74NAC domain containing protein 1