PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000108G0120
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 224aa    MW: 23128.1 Da    PI: 7.6628
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000108G0120genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.89.4e-302105199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++ Cvl+  +     p+ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++l+q
  PH01000108G0120   2 SCNGCRVLRKGCSDACVLRASIewidgPQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQ 95 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      ++a+++l++e
  PH01000108G0120  96 AAADAVLRGE 105
                      ***9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.1341107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-232100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR ASIEWIDGPQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGESLRPF STVPAAFTDS  120
DMAGLYDNVG SSSSHHSSPE NSSSAPSRKR SRNGGAGGQQ LQGKQLPAVL RSCELDLCLT  180
PVSPLAGGGR GGASDEYSTT TCEKLASADA EAGAAPTLLN LFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000108G0120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666861e-180AK366686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045L18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177395.11e-119LOB domain-containing protein 39-like
SwissprotQ9SN232e-56LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A3B6JFF01e-117A0A3B6JFF0_WHEAT; Uncharacterized protein
TrEMBLA0A453HER91e-117A0A453HER9_AEGTS; Uncharacterized protein
STRINGTraes_4DS_9575221BB.31e-118(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-55LOB domain-containing protein 38