PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000105G1660
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 281aa    MW: 32191.5 Da    PI: 10.4743
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000105G1660genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.95e-1455109461
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                       kr rr  +NRe+ArrsR+RK+a +  Le  v +L aeN +     ++l+++ +k k 
  PH01000105G1660  55 TKRMRRVLSNRESARRSRKRKQAHLNDLEFQVTQLRAENASFL---KRLTDMTQKYKE 109
                      69*************************************8665...666666665553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-1352116IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.81854117IPR004827Basic-leucine zipper domain
PfamPF001707.8E-1255108IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.8E-1156109No hitNo description
SuperFamilySSF579595.22E-1156107No hitNo description
CDDcd147025.15E-1657107No hitNo description
PROSITE patternPS0003605974IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSILALLCGD GPIRVTNSNA IDDTVVQGKP ANSGTSKEQS DDDGDLEENT DPTNTKRMRR  60
VLSNRESARR SRKRKQAHLN DLEFQVTQLR AENASFLKRL TDMTQKYKEA TLDNRNLTVD  120
VETMRRKISD FLMGTSETRL DTVSSTTTTS ACHPKLHSQH EVTMGADLIK QTKEMLHVAK  180
RVDGEDSQRE RKQCLLSAES KARQERHAVR EEKAPGPKAM HGRASMHPWR AVTKWPRGEP  240
RWKPGARHEK LGWFVAQEGW CKEQRKKRFG FYVRLHWILF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874RRSRKRK
26875RRSRKRKQ
37075SRKRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000105G1660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2515895e-94AK251589.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf118p04, mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.32e-22bZIP family protein