PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000105G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 361aa    MW: 38838.4 Da    PI: 6.1099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000105G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.42.2e-17211257455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  PH01000105G0060 211 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 257
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.35E-18204261No hitNo description
PROSITE profilePS5088818.209207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-20209265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-21211265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-14211257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-19213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MNQFVPDWSS NMGDAFAPLG GEDDGLIELL WCNGHVVMQS QAPRKPTRPE KVAAAAVMQE  60
DEAAPWFQYA VDDSLEKDLF SELFSEMPAA ADTAGKACKE ECGALVGSAL TAPQSKLMPP  120
PRPAAHVARD KAGLGDVDDV CAVSEVLMAQ TSCAAKTEAS GAANRGGGKR KQRDTMESGS  180
HSEDVEFESA AVTCEPAQKL KTAKRRCAAE VHNLSERRRR DRINEKMKAL QELIPHCNKT  240
DKASMLDEAI EYLKSLQLQL QMMWMGGGME LAPVMFPAGV HQYMQRMGVG MGPLHMASMN  300
RMPPFMAPPA VQSSPGMSFY QLGAATNLQQ NPAPPVVPGG SLPTARTLPP DNNLHKKYGA  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205LKTAKRR
2203219KRRCAAEVHNLSERRRR
3215220ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000105G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618078.11e-123transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
RefseqXP_015618079.11e-123transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLA0A0E0JC931e-127A0A0E0JC93_ORYNI; Uncharacterized protein
STRINGORUFI12G20600.11e-123(Oryza rufipogon)
STRINGOS12T0610200-011e-123(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-30phytochrome interacting factor 3